Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1100 122 6e-23 seq7445 104 2e-17 seq1633 98.7 7e-16 seq4126 95.1 8e-15 seq1820 95.1 8e-15 seq295 91.5 1e-13 seq1566 86.0 4e-12 seq1300 82.4 5e-11 >seq1100 Length=765019 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 408272 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 408331 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| |||||||||| |||||||| Sbjct 408332 TCATCCATTCATGCGTGTCACTAATTTGATGACGA 408366 >seq7445 Length=11280 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||| ||||| |||||||||||||| ||||||||||| ||| | | ||||||| Sbjct 6345 AAGCCTGTTCCTTTGGCTGTGGTTTCACTAGATAGTAGTAAGGAGCAGTGGGGATCTCGT 6404 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6405 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 6439 >seq1633 Length=540360 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 137013 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 137072 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 137073 GCCGGTATTTAGCCTTA 137089 >seq4126 Length=108736 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 95474 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTTTCGGTCTCGT 95415 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 95414 GCCGGTATTTAGCCTTA 95398 >seq1820 Length=476303 Score = 95.1 bits (104), Expect = 8e-15 Identities = 76/92 (83%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||||||||||||||||||||||| |||| |||||| ||||| || ||||| ||| Sbjct 247124 CCCGTTCCCTTGGCTGTGGTTTCACTAGCTAGTAGGTAGGGACAGTGGGAATCTTGTTTG 247065 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | |||||||| |||||||||||||||| || Sbjct 247064 TTCATTCATGCGGGTCACTAATTAGATGATGA 247033 >seq295 Length=1704123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 78/95 (82%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||||||||| ||| ||||| || ||||| || Sbjct 1110800 AAGCCCGTTCC-TTGGCTGTGGTTTCGCTAGATATTAGGTAGGGACAGTGGGAATCTTGT 1110742 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||||||||| | || || Sbjct 1110741 TTATCCATTCATGTGCATCACTAATTACACGATGA 1110707 >seq1566 Length=565029 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||| ||||||||||||||| ||||| | ||| ||| | || |||||| Sbjct 163257 AAGCCCATTCTCTTGGCTGTGGTTTCACTAGACAATAGGTAGAGACAGTGGGAATCTCAA 163198 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| ||| ||||||||||| || Sbjct 163197 TAATCCATTCATGCGCATCATTAATTAGATGATGA 163163 >seq1300 Length=659237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||| |||||||||||||||||| || |||||| || ||| | || |||||| | Sbjct 605844 AAGCCCATTCCCTTGGCTGTGGTTTTGCAAGATAGCAGGTAGGAACAGTGGGAATCTCAT 605785 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| || ||| | ||||||||||||||| || Sbjct 605784 TCATCCATTAATGTACATCACTAATTAGATGATGA 605750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334854048985589