Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq889 96.9 4e-15 seq470 87.8 2e-12 >seq889 Length=882587 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || |||||||| || |||||| || | || ||||| || ||||||| Sbjct 329167 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCTGCAATGTGGATAT 329226 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || ||||||||||| || | ||| || |||||||| || || || | Sbjct 329227 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCAGCTGCCATTTTGATGATAGTTT 329286 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | | |||||| | ||||| || | ||| | ||| ||||||| Sbjct 329287 TCTGGGAGACTTCCCATACTGTTTTGTACAGCATCTTCAGATCCTCTGGAA 329337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||| || || | || || || || ||||| || || || | Sbjct 357623 CACTGAAGACTTTCTTGGTTTCCTTATGCAAGTTGGAAACAGCAATTCTGGCAGCAAGGA 357682 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||| || || || || | ||| || ||||| || | || || |||| ||||||| Sbjct 357683 TGGCGTAGTCTGGGTGCTTTGTTGTCAGTGTGGCGGCAGTCTCAGCAGCCAAGGTGTCCA 357742 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 ||||||| || || || ||| | || | || ||||| |||||||||| Sbjct 357743 ATTCTACTGTGGTGACCCCACTGTACAAGCCCTGGATTACCTTCATAG 357790 Score = 86.0 bits (94), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 63128 ||| || ||||| ||||||||||| ||||| || || ||| || || || | || ||| | Sbjct 339292 CACACGCTTCATGAAGAGATCAGGTATCCAGAGTGC-ATAGAAGAGGTCCCGGGCTCTCT 339350 Query 63129 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 | ||||| || || |||||||| || || || | |||| | | | |||| | ||||| | Sbjct 339351 GCTCCTCCTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCAGG 339410 Query 63189 GTTCCAAGTATATGGC 63204 | |||| ||| ||||| Sbjct 339411 GCTCCAGGTAGATGGC 339426 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 62803 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862 ||| ||||| || ||||||||||||||||| || | || || || || ||||| |||| Sbjct 337245 CTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 337304 Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922 || || ||||| |||| ||| | || || ||||| || ||||||| || || || || Sbjct 337305 GCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACTCGATGATGGC 337364 Query 62923 TTTCCA 62928 | ||| Sbjct 337365 GTACCA 337370 >seq470 Length=1305644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 32925 TTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 32984 |||| || |||||||| | |||||| |||||||| ||||||||||| || ||||| ||| Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 32985 TGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 || || || ||||| || | || || || || || |||||| | |||||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTC 593428 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || || || ||||||||||| ||||| | ||| || ||||| Sbjct 590503 ACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATGG 590444 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || ||||||||||| ||||||| Sbjct 590443 TACTGGATTGGAAAAATGACAAATC 590419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633451264392400