Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1120 120 3e-22 seq14380 89.7 4e-13 >seq1120 Length=750286 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| |||| |||||| ||||||| | || |||||| | | Sbjct 84571 ATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACCCTTGAGGTGGAGCCCAGT 84512 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | || | ||| || || ||||| || || |||||||| Sbjct 84511 GATACAATTGAAAATGTTAAGGCCAAGATTCAG-GATAAGGAAGGAATCCCTCCTGACCA 84453 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||| || | ||||||| |||||| || || ||||| Sbjct 84452 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAA 84393 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || ||||||||||| Sbjct 84392 CATTCAGAAAGAGTCAACCCTGCATTTAGTGCT 84360 >seq14380 Length=3375 Score = 89.7 bits (98), Expect = 4e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| |||| |||||| ||||||| | || |||||| | | Sbjct 182 ATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGAGCCCAGT 123 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | || | ||| || || ||||| || || |||||||| Sbjct 122 GATACAATTGAAAATGTTAAGGCCAAGATTCAG-GATAAGGAAGGAATCCCTCCTGACCA 64 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||| || | ||||||| |||||| || || ||||| Sbjct 63 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAA 4 Query 25178 TAT 25180 || Sbjct 3 CAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433207488639485