Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq470 102 9e-17 >seq470 Length=1305644 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || || || || | ||||||||||||||| ||||| ||||| |||||||| |||| Sbjct 601037 AAGGTCAACCCAGGCATCAGTCCTCGTTTCTTCAGCCAGAATATAGAAGCAAATGAACCA 600978 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || ||||| || ||||| || |||||||||||||||| ||| || Sbjct 600977 GAGAAAAAGATCCCTTCTACAGCTGCAAATGCCACAACACGCTC 600934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || | ||| |||||||| ||||| | |||||||| ||||||||| Sbjct 593540 ATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATTTGG 593481 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || || ||||||||||| ||||| ||| || Sbjct 593480 AAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTCCAC 593425 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || || |||||||| ||||||||||| | ||| || || || Sbjct 590503 ACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATGG 590444 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || |||||||| |||||||| ||| ||||| ||| |||| || ||||| Sbjct 590443 TACTGGATTGGAAAAATGACAAATCGACGTGGGTTCTCTCTTAGCAAGGGCTC 590391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556701962417560