Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4483 96.9 7e-15 seq90 91.5 3e-13 >seq4483 Length=86224 Score = 96.9 bits (106), Expect = 7e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACA-GCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 |||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 21849 TGTCTCTGTGGCGCAATGGACAAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGA 21790 Query 142111 CCCCCGCCAGAGA 142123 |||| |||||| Sbjct 21789 GTCCCGGCAGAGA 21777 Score = 87.8 bits (96), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACA-GCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||||||||| |||||||||| || || ||||||||||||||| ||||| ||||||||| Sbjct 64325 TGTCTCTGTGGTGCAATGGACAAGCACGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGA 64266 Query 142111 CCCCCGCCAGAGA 142123 |||| |||||| Sbjct 64265 GTCCCGGCAGAGA 64253 >seq90 Length=2605502 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1878148 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1878207 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1878208 CCCCACGTTGGGC 1878220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027536292960779