Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq889 122 2e-22 seq187 93.3 8e-14 >seq889 Length=882587 Score = 122 bits (134), Expect = 2e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || |||||||| || | ||||||||||| || |||||||| || Sbjct 339298 CTTCATGAAGAGATCAGGTATCCAGAGTGCATAGAAGAGGTCCCGGGCTCTCTGCTCCTC 339357 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | |||||| |||||| |||| ||||| || ||||| || || | |||||||||||||| Sbjct 339358 CTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCAGGGCTCCAG 339417 Query 245128 GTAGA 245132 ||||| Sbjct 339418 GTAGA 339422 Score = 120 bits (132), Expect = 6e-22 Identities = 98/118 (83%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| ||| | ||||||||| ||||| ||| ||||| |||||||| ||||||||||| Sbjct 337215 CACCTCGTCCTGGCTGGTGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGT 337274 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGGG 244821 |||||||| ||| || ||| ||| |||||||||||||||||| | |||| ||||| Sbjct 337275 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGG 337332 >seq187 Length=2081563 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | ||||| ||| | || || ||||| ||||| ||||| ||| ||||||| Sbjct 727404 GGAGAGAGAATTGTAGCTTTTGCTGCTGTTGAGGGGATCTTTTTCTCTGGCTCCTTCGCT 727345 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| | | || || ||||| || || || ||||| || || || Sbjct 727344 GCCATCTTCTGGCTAAAG-AAACGGGATCTCATGCCTGGCCTGACTTTCTCCAATGAGCT 727286 Query 42815 CATCAGCAGGGACGA 42829 |||||| ||||| || Sbjct 727285 CATCAGTAGGGATGA 727271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944069839047440