Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1120 129 1e-24 seq14380 122 2e-22 >seq1120 Length=750286 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | || |||||||| ||||| | || || || || ||| Sbjct 84381 TCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAG 84440 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||||||||| | ||||||||||| |||||||| || || || || || ||| Sbjct 84441 ATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTT 84500 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| || || || |||||||| || || Sbjct 84501 TCAATTGTATCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACA 84560 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 84561 AAGATCTGCAT 84571 >seq14380 Length=3375 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || ||||| | || |||||||| ||||| | || || || || |||||||||||| Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 ||||| | ||||||||||| |||||||| || || || || || ||||| || | | Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || || | || || || || ||||| || || || |||||||| || || || |||||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 288472 AT 288473 || Sbjct 181 AT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179309506286282