Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq665 98.7 1e-15 seq1120 96.9 4e-15 seq263 95.1 1e-14 seq4120 87.8 2e-12 seq33 87.8 2e-12 seq616 84.2 2e-11 >seq665 Length=1067793 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/98 (83%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 56995 ATGAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 || |||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 758339 ATAAAAACTTTTGGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 758398 Query 57052 ACATACTCACCACTATACTACCGAGGATTGAATATATA 57089 ||||| ||||||||||||||||||| | | ||||| Sbjct 758399 GGATACTTACCACTATACTACCGAGGACTCACCATATA 758436 >seq1120 Length=750286 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||| ||||||| || ||| || ||||| ||||| |||| |||||| || | Sbjct 84356 ACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCC 84415 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || ||||| ||||| | || | | ||||| Sbjct 84416 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTT 84475 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| | || | | | | | || || || || | ||||| || | |||| Sbjct 84476 ATCC-TGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGTGA 84534 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||| || || || || || |||||||| ||||| || Sbjct 84535 TGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTT 84574 >seq263 Length=1776510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 337397 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 337456 Query 57067 TACTACCGAGGATTGAATAT 57086 ||||| ||||||||| |||| Sbjct 337457 TACTAACGAGGATTGTATAT 337476 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 336023 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 336082 Query 57066 ATACTACCGAGGATTG 57081 |||||| ||||||||| Sbjct 336083 ATACTAACGAGGATTG 336098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 335804 ATTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTAC 335745 Query 57062 CACTATACTACCGAGGATTGAATATATA 57089 |||||||||| |||||| | ||| ||| Sbjct 335744 CACTATACTAACGAGGAATACATACATA 335717 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 1655594 AAAAATTCGTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1655535 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || |||||||||||| |||||||| Sbjct 1655534 CTAACCACTATACTAACGAGGATT 1655511 >seq4120 Length=109457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 50571 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 50512 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 50511 ATACTAACGAGGA 50499 >seq33 Length=3581497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 |||||||| | | ||| |||||| ||||||||||||||||||||| |||||| ||||| Sbjct 841169 TCTCCTCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACT 841110 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 841109 ATACTAACGAGGA 841097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct 839830 AATTGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACTATACTAACGAGGA 839772 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 |||||||||| | | ||| |||||| ||||||| ||||||||||| | |||||||||| Sbjct 722770 TTTCTCCTCGTCGGGGAATTGAACCCCGGTCTCCTGCGTGACAGGCAGGGATACTCACCA 722829 Query 57064 CTATACTACCGAGGA 57078 ||||| || |||||| Sbjct 722830 CTATATTAACGAGGA 722844 >seq616 Length=1115101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || |||||||| | | ||| |||||| ||||||||||||||||||||| |||||| | Sbjct 59986 TTATCTCCTCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTTC 59927 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 59926 ACTATACTAACGAGGA 59911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || |||||| | | | ||| |||||| ||||||||||||||||||||| |||||| || Sbjct 68512 TTATCTCCTTGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCC 68453 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 68452 ACTATACTAACGAGGA 68437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543057855338960