Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1985 147 3e-30 seq4361 98.7 1e-15 >seq1985 Length=426725 Score = 147 bits (162), Expect = 3e-30 Identities = 201/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 8900 CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCT 8959 ||||| |||||| ||||| || || | || || || ||||| || | || || Sbjct 335191 CCCTTTACATTGCTACAAACAAGTTTTTGTAAGGAAGCAGTATTCACAATCTGAAAGCCC 335132 Query 8960 ACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019 || | |||||| ||||| || ||||||||||| | ||||||||||| || | || Sbjct 335131 ACATTCCCGCCAAAGGTACTTGGTTTCCAGTATTCAGGGGAGCAGATAGGATTTCCTATC 335072 Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079 || || |||||||| || || || |||| || | ||| |||| || ||||| ||||| Sbjct 335071 AGGCCCTTCAAGGAGAATGGGGCACCCATTTCTACCATGGTCTCTCCAAAGATAGCACCA 335012 Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139 || || || || || || || ||||| | ||| || || ||||| || ||||| || || Sbjct 335011 GGGCGAGGCTTCTCTACCATTAAGCCGGGGTATAGCTCCACAGCGTCTACGTCTCCGTAA 334952 Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 || ||| | || ||||| || |||||||| |||||||| Sbjct 334951 AGTTCTTGGAGTTCTGCAGCCATTTCCTTCTCTCCTACAAG 334911 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || || ||| ||| ||| || | ||| ||||||| | | | || |||| Sbjct 332471 ATTGAGTTATTGAAAAGGAACTGATGGTAGCCATACTCCTTGCCCTGGATCAGAAAGGAG 332412 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | |||||| |||| || || ||||||||||| || || || || ||| Sbjct 332411 TCTGGCATGAGTGGGTGCCAGTGGTACAGAGTGTTGAACTCGGCAGCAATCCGATTTTGG 332352 Query 9613 TACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || || ||| ||| || || || ||||| || | |||| |||||| || | Sbjct 332351 TACTGGAACTGCTGGTG--GAATAGCAATTCTGGGTCGAACTTCAGCTTGAAGTGATAAC 332294 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || || ||||| ||||| | | || | ||| ||||||||||| || || Sbjct 332293 CACTCAGATGCTGCACATAGTCTTCAATCACAATTTTAATGGTTTCACCTGT 332242 >seq4361 Length=92844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || | |||||| || ||| | || || || ||||| ||||||||||| | Sbjct 16028 GCTGTATTGATGATGTCAAATCCTGTTTTTCCCCCAAAAGTGCTAGGTTTCCAGTATTCA 16087 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| ||||| ||| ||| || ||||| | ||||| ||||| |||| || | Sbjct 16088 GGGGAACAGATAGGGTTGCCCAGAAGGCCTTTAAGTGAAAAGGGAGCTCCCATTTCCACC 16147 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || |||||| ||| ||| |||||||| | | ||| ||| || | | Sbjct 16148 ATGCTTTCTCCAAAGATGTTACCAGGATAAGGTTTTTCCAGCAGCAAGGCAGGATAAAAT 16207 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| || | || ||||| ||| || | || || || ||||| | ||| ||| Sbjct 16208 TCCATAGCATCAATATCTCCATACAGGTTCTCAAGTTCAGCTGCCATCTCTTCCTCTCCT 16267 Query 9176 ACAA 9179 |||| Sbjct 16268 ACAA 16271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723521565634600