Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq889 89.7 6e-13 seq187 89.7 6e-13 >seq889 Length=882587 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | ||||| ||||||| | | |||||||| |||||||| || ||||||||| Sbjct 331651 TAAATGTTACTTGTGTAAGGCTCAATGGATTCATTGTTTCCCAAGATCTGAGCTGTGGAG 331710 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| |||| | || |||||||| Sbjct 331711 GCTGTGGGCATTGGTGAAAGAAGCAGGCTGTT 331742 >seq187 Length=2081563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 |||||| ||||| ||||| ||| || ||||||||| |||| ||||| | |||||| || Sbjct 727282 GATGAGCTCATTGGAGAAAGTCAGGCCAGGCATGAGATCCCGTTTCTTTAGCCAGAAGAT 727341 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| || ||||||||||| ||||||||||| ||| Sbjct 727342 GGCAGCGAAGGAGCCAGAGAAAAAGATCCCCTCAACA 727378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613332204740040