Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1120 132 1e-25 seq14380 122 2e-22 seq983 87.8 4e-12 seq33 87.8 4e-12 >seq1120 Length=750286 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | || || || ||||| || || | ||||||||||| || ||| Sbjct 84351 CGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTG 84410 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||| || || ||||| |||||||| ||||| ||| |||||| Sbjct 84411 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCT 84470 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || ||| | || || | | || || || | Sbjct 84471 TCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGG 84530 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || |||||||||||||| || || Sbjct 84531 GTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTG 84568 >seq14380 Length=3375 Score = 122 bits (134), Expect = 2e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 ||||||||||| || ||| | |||||||||||||||||| || || ||||| |||||||| Sbjct 3 GTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTG 62 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||||| ||| |||||||| ||||||||||| ||| || ||| | || || Sbjct 63 TTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATC 122 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || || || | ||||| || ||||| || |||||||||||||| || || Sbjct 123 ACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTG 179 >seq983 Length=821879 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | ||||||||||| || ||| | |||||||||||||||||| || || ||| Sbjct 327458 CCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAG 327517 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| ||||| ||| |||||| Sbjct 327518 ATCAGACGCTGTTGGTCAGGAGGGATTCCT 327547 >seq33 Length=3581497 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||| ||||| || |||||||||| ||||||||||| || || | |||||||| Sbjct 768916 ACCAGGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCA 768975 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||||||| || || ||||| || | |||||| || || Sbjct 768976 AGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCTGG 769013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178576920533873