Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1120 109 6e-19 seq14380 96.9 4e-15 seq33 93.3 5e-14 >seq1120 Length=750286 Score = 109 bits (120), Expect = 6e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| | ||||| || ||| || || || |||||||| || |||||||| | Sbjct 84356 ACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCC 84415 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || |||| ||||| ||||| | || | | ||||| Sbjct 84416 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTT 84475 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||| | | | | || || || | ||||| || | ||||| Sbjct 84476 ATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGTGAT 84535 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 84536 GGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTTG 84575 >seq14380 Length=3375 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 46412 ATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGC 46471 || |||||||| || |||||||| | || || ||||||||||| || || |||| ||| Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 46472 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTG 46531 || ||||| | || | | ||||| ||| ||||| ||| | | | | || Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 46532 TCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 || || | ||||| || | ||||||||||| || ||||| ||||| |||||||| ||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 46592 ATTTTG 46597 || ||| Sbjct 181 ATCTTG 186 >seq33 Length=3581497 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 ||||| || | | |||||||||||| |||| ||| ||||||||||| |||||||| Sbjct 768895 TTGCCACCACGGAGACGCAACACCAGGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCA 768954 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || |||||| | || || ||||||||||| || || |||| | |||||| || Sbjct 768955 GACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATC 769010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565077172811880