Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1120 113 5e-20 seq3179 96.9 3e-15 seq14380 82.4 8e-11 seq33 82.4 8e-11 >seq1120 Length=750286 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| || || || |||||||||||| | || || ||| || Sbjct 84574 AAGATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACCCTTGAGGTGGAGCCC 84515 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| |||| | || || | || || || ||||| || | ||| Sbjct 84514 AGTGATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGAC 84455 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | || ||||| |||||||| || | ||||| || |||||| Sbjct 84454 CAACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTAC 84395 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || || | || |||||||| ||||||||| || | || || Sbjct 84394 AACATTCAGAAAGAGTCAACCCTGCATTTAGTGCTGCGTCTGCGTGGTGG 84345 >seq3179 Length=204681 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 38379 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCG 38438 || ||||| |||||||| || | ||||||||| |||||||||||||| || ||| | Sbjct 49738 GCTGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCAGACTACAACATCCAGAAAGAATCC 49797 Query 38439 ACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 || |||||||||||||||||| ||||||| ||| || Sbjct 49798 ACACTGCATTTGGTGCTGCGTCTGAGAGGTGGCTGC 49833 >seq14380 Length=3375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| || || || ||||||||||| | || || ||| || Sbjct 185 AAGATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGAGCCC 126 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| |||| | || || | || || || ||||| || | ||| Sbjct 125 AGTGATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGAC 66 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | || ||||| |||||||| || | ||||| || |||||| Sbjct 65 CAACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTAC 6 Query 38421 AACAT 38425 ||||| Sbjct 5 AACAT 1 >seq33 Length=3581497 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38350 TTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||| | || || ||| | || || | || ||||| ||||| || || | |||||||| Sbjct 769018 TTCCCCCAGATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCC 768959 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||||||||||||| | || ||||| ||||| ||||| Sbjct 768958 TGTCTGACTACAACATCCAAAAGGAATCTACTCTGCACCTGGTGTTGCGT 768909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500030131960960