Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq470 125 8e-24 >seq470 Length=1305644 Score = 125 bits (138), Expect = 8e-24 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| || || | ||| |||||||| || || |||||||||||||||| ||| | Sbjct 601066 CCTCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCT 601007 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||||||||||||| ||||| || || || |||||||| |||||||| | Sbjct 601006 TCAGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATG 600947 Query 19103 CAAC 19106 | || Sbjct 600946 CCAC 600943 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/91 (80%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 19242 TATCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297 ||||||||| ||||||||||||||||||||| || || || || || || || || | Sbjct 593533 TATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATTTGGAAACCAT 593474 Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 | ||||| | |||||||||||| || ||||| Sbjct 593473 AGAAACAGCGTGCTTCTGTTATTTGCACTTC 593443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561948465491160