Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq470 96.9 4e-15 seq3 87.8 2e-12 >seq470 Length=1305644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||| || || | ||| ||||||||||| || || ||||| | |||| ||| || Sbjct 601064 TCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCTTC 601005 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||| || ||||| || || || ||||| || ||||||||||| Sbjct 601004 AGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATGCC 600945 Query 37320 ACAAGACG 37327 |||| ||| Sbjct 600944 ACAACACG 600937 >seq3 Length=8125152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 || ||| ||||| | ||||||||||| ||||| | ||||| || || || || || ||| Sbjct 357400 GGGGTTCTACATTCTAAATTTTGGATCGTTGACATGAAACACGTGTACATTGGCAGCGCT 357459 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAA 153378 ||||||||||||||||| | |||||||||| Sbjct 357460 AATATGGATTGGAGATCTTTGACTCAAGTAA 357490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592147849036760