Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq272 114 1e-20 seq1046 86.0 5e-12 >seq272 Length=1747054 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| |||| |||||| |||||||| || || | |||||| || || || || ||||| Sbjct 1531381 AGCCCTGTGATGTGAGCAATCATGTAAGTAAGTAAAGAGTAACTAGCAATATTGAAGGGG 1531322 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | ||||||||| |||||||||||||||||||| || || || || || | Sbjct 1531321 ACACCCAACCCCATGTCTCCCGACCTCTGGTAGAGCTGGCAAGACAGTTCACCATTTGAT 1531262 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || ||||| || | | || || ||||| |||||||| Sbjct 1531261 ACATAGAACTGGCAGAGTGCATGACATGGAGGGAGAGCCAT 1531221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| | || || ||||| || || ||||| ||||| || || ||||| |||| ||| Sbjct 1527560 CATGTCTTTATATTCAGCTCCAAAGTGTCTCCATTGGAAACCATAAACCGGACCCAAGTC 1527501 Query 30210 TCCCTCTTCCCTG--TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267 ||| || || ||| || | || ||| ||||||||||| | | || || ||||| Sbjct 1527500 TCCTTCCTCTCTGGATGTT--AAACCCTGTTTGTCCAAAAATTGCCGAGATCCATTGGCA 1527443 Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||| ||||| |||||||| || || ||||| | | ||||||| || Sbjct 1527442 TCCCATATCTTGACCCCCTTTTCAGACAGCTCCTGAGCACTTGTGGAACC 1527393 >seq1046 Length=797142 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 112105 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 112164 || || || ||||| |||||||| | ||| || ||| || || ||||| || || || Sbjct 246900 AGTTCTCTACTGAGCACTACGTTAACTCTGCCTTTCAAGGGCCTGTTCTTCTCCGGTATT 246841 Query 112165 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| |||||||||||||| ||||| || ||||| || ||| Sbjct 246840 GAGAACCACGTCTTTCTACCCATGATCACTACATTCTGTTTACCT 246796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408503960763887