Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1954 125 8e-24 seq16 107 2e-18 seq1108 87.8 2e-12 >seq1954 Length=435601 Score = 125 bits (138), Expect = 8e-24 Identities = 592/930 (64%), Gaps = 33/930 (4%) Strand=Plus/Minus Query 160055 ATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAA 160114 |||||| || | || || | || || || ||||| ||| ||| |||||||| || || Sbjct 243163 ATGTTCCTCTAAGCACTGAATTGCAAATACATCAACATCTGTGTCAAATTTATTGGCAAA 243104 Query 160115 CAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGA 160174 || || || |||| || ||||| | | |||||| | || || || || | || Sbjct 243103 CAAGTGATGT---TTCTTCAGCATCCATTTTAAGTCTCCAGCTCCAAATACACATATAGA 243047 Query 160175 ACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTA 160234 || | || || || |||| || || || ||||||| | | ||| |||||||| | Sbjct 243046 GCGGACATGTACACCTCTGCATGGAGGATATGGAGCTCCATCGGACACATCACCTTCATG 242987 Query 160235 GTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACAT 160294 || | ||| ||||||| || || | || | |||||| || || | ||| ||| Sbjct 242986 ATAGTACCATTTCACAAGTCTAGCCAGGGCATTCATGTCTGACACATCAAACTTGC-CAT 242928 Query 160295 CAGG-GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGT 160353 | |||||| || || || || || || | |||| |||||||||||| |||| Sbjct 242927 TGGCTGGAACGAAGCCAGGGACTCCAGGAATTCTTTGTAATGTGGCCCACAGGAACTCGT 242868 Query 160354 CGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAA 160413 | ||||| || ||||| || | ||| || || |||||| |||| ||| || | Sbjct 242867 CTGGGCTATAAGTGTCTTTTGCCCACTCAATAAACTCTAGGATTTTAGAATCCTCAAGTA 242808 Query 160414 CGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGG 160473 || ||| | || | || ||||| || || ||||| || |||||| | | Sbjct 242807 TATGTTCAACAAATTTCCTACTAACAACAAAATAAGCACTGCCTGAAAATATCTGGGTTT 242748 Query 160474 GTATAGGCGGCGTG-TCTT--TG---TCCTGACCGGTGTTA-GA-CACCACTCCTTTCAC 160525 |||||| || | | |||| || ||| | || || || || || | ||||| Sbjct 242747 TTATAGGGGGAGGGCTCTTACTGACTTCCATATTCTTGATATGACCATCAATTATTTCA- 242689 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 || | || | | ||||| || || | | ||||| ||| || || || Sbjct 242688 TAGTGGGTTTTCCATCTTCTTTCT-------TTATTGGCAGGCATTTTTTCAGTTTCAAG 242636 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||||| | || | | | |||| | | || ||||| | ||| || |||| || Sbjct 242635 ACTGTTTTCTCCCTTTAAGGCCTTCAATTTTTCCACTATCTCAAAGTTGGTTTTGATAGG 242576 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 ||||| |||| || | || |||| ||| ||||| || | ||| || ||||| Sbjct 242575 GAAGTCCATACCACAGAGATTGATCAAGTATTTCCAAGTCACACTCTTTCTGTAAAGGTC 242516 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 |||| || || | || || ||||| | |||||| || || || || ||| ||||||| Sbjct 242515 TTTCATACAGTTCAAGTCAGCTTGCACCCTGCTCCATGAGGCATAGACCACGCTCTCTAG 242456 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAA 160822 | ||||| | ||| || || || ||||| || | ||||| || | || || || Sbjct 242455 CTGGCTGGCAATAAAAACATTTTCAAAACAAGATGCAATTCCTTGGACTGCAGCTAGGAA 242396 Query 160823 GAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 | || ||| | |||| || || || | |||||| ||||||||| || || Sbjct 242395 GGAC------TCCGGGGACTTTTTATCAACATGAATGCAATAGTAGTTCTGAGGTGCATA 242342 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 | || | || | || || |||| ||||| | | ||| | || || || || || Sbjct 242341 AACGGATCGTAGAAGTCTTTCAAACAGTTCTATACTTTTATGAGTTACCATTGAATATGC 242282 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || |||||||| |||| || |||||| Sbjct 242281 AATTGGAAACTCACTCTCTTCTTTACTCAG 242252 >seq16 Length=5018641 Score = 107 bits (118), Expect = 2e-18 Identities = 552/865 (64%), Gaps = 29/865 (3%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || |||||||| ||||||||||| ||| || || ||||| | | |||||| | Sbjct 2658430 GTCAAACTTATTTGCTAACAGATGGTG---GTTTTGGAGAATCCATTTGAGGTCTCCTGC 2658486 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || ||| ||| ||| || |||| | || || |||| ||||| Sbjct 2658487 TCCGTATACACAGGTACTCCGTCGGTGGGTACCTGTGCAGAGGGGATAAGGAGCCCCTTT 2658546 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || | || ||||| ||| |||||| |||| || || || || |||||| || Sbjct 2658547 GGCGATATCCCCTTCCAGGTAGCTCCACTTTACAAGTCTTGCAATGGCTAACATGTCTGA 2658606 Query 160277 GGTGTCGTATTTGTACATCA-GGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 ||| | |||||| | ||||| |||| || || || || || ||||| ||||| | || Sbjct 2658607 GGTTTGGTATTTAT-CATCATATGGAAGGGAGCCAGGTACCCCAGGCATCCGCTGCAAGG 2658665 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA 160395 ||||||| || || || |||||||| || || || | ||| |||| | || || Sbjct 2658666 TGGCCCAAAGAAACTCATCTGGGCTGTAGGTATCTTTTGCCCACTCCACAAGCT-TC--- 2658721 Query 160396 TTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 | ||||| |||| | | || ||| | ||| || || ||||| || || Sbjct 2658722 TGAACCTCGGGGTCCTTAAACAGATGCTGGACGAATTCTCTTGTAACTACAAAATAAGCA 2658781 Query 160452 CTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGT----T 160507 | || ||||| || || | |||| || || | | |||| || || |||| | Sbjct 2658782 TTCCCAGAGAACATGGGGCTCCGTATTGGAGGTG-GGCTTT-TCAGCTCCTGTGTCCTGT 2658839 Query 160508 AGACA-CCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTG 160566 | ||| | | ||||| | || | | |||||| | | | ||||| || Sbjct 2658840 ACACAGAGTTTTCCTTCACTA---TATGGCTGTACTTCCAGCGCAGTTTTTTGTGTTCTG 2658896 Query 160567 GCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCA-GCTGCTTGACGATC 160625 || | || || |||| ||||| || | || ||| | |||| || || ||| Sbjct 2658897 GCGTCTTCTCGGTTTCTAAGCTGTTCTTGCCATTTAGGACTTTTAGGCTG-TTCACAATC 2658955 Query 160626 TCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTC 160685 || || ||||| | || ||||| | ||||| ||| | | |||||||| | Sbjct 2658956 TCAGCATTAGTCTTTATAGGGAAGTCCGCCCCGCAGGTGTTGAGGAGATACTTCCACT-- 2659013 Query 160686 GCGCTCAGGT--CGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGG 160743 || || | | | | || ||| ||| || || | ||| || ||||| | | ||| | Sbjct 2659014 GCACTTTGCTTCTGAGAAGATCCTCCATACAGTTCAAATCGGCTTGCACCCTGACCCAAG 2659073 Query 160744 AAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGA 160803 | ||||| || || || | ||||||||| | |||||| || || || || || | | Sbjct 2659074 AGGCGTAGGTCACATTTTCCAATTTACTGGCAATAAAGACATTCTCAAAGCAAGATGCAA 2659133 Query 160804 TTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACA 160863 | ||| || ||| | | | | | || ||| | ||||| || ||||| ||| Sbjct 2659134 TGCCCTTGACAGCCTGCTGGTAAAGTTCGGGAGCTTTTTGATCCACATGGACGCAGTACG 2659193 Query 160864 GGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGA 160923 |||||||| | ||| ||||| || |||| ||| || || || || || || | || | Sbjct 2659194 CATTCTGAGGTGTGTAAATGGCTCTTAGCAGCCTTTCAAATATTTCAATATTCTCGTGTA 2659253 Query 160924 TCACGATAGAGTAGGCTATCGGAAA 160948 ||| ||||| ||||| || ||||| Sbjct 2659254 CCACCATAGAATAGGCGATGGGAAA 2659278 >seq1108 Length=757687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | || || || || | |||||| ||||| || || | || || | Sbjct 542940 AGATATTTTGCGAGCTCTTCAGGAGAAAGAAAATCATCTACATGAATGAAAGAGTCTGAT 542999 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||||||||||||||| |||| ||| || |||||||| |||| ||| || | | ||| Sbjct 543000 GGAATGTAGTTTTCATAGTTTTCTCTTGATGGTCCTAATACTACTGGAACAGAGCCTGCC 543059 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAG--ATGTAGTCAGTGTGAATTGAGTTTTCAAAAG 176409 | || || || || ||||| || | ||| || |||| ||||| || ||||| | Sbjct 543060 AGCAA--GGCATTATATAGTTTCTCAGTTACGTAATCCTTGTGGATTGAATTCTCAAAGG 543117 Query 176410 CTAAATAGAACTTACA 176425 | ||| || ||||| Sbjct 543118 AAAGATAAAATTTACA 543133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577054555438440