Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1120 114 3e-20 seq14380 100 6e-16 >seq1120 Length=750286 Score = 114 bits (126), Expect = 3e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 || |||||||| | ||||| | |||||||| | || | |||||| || || || Sbjct 84339 ATGATACCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAG 84398 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| | || ||| |||| |||| || || ||||||||||| | | |||||| ||| Sbjct 84399 TCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCA 84458 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || || ||||| || | ||| | Sbjct 84459 GGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGC 84518 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || |||||||||||||| | ||||| | ||| |||||||| || Sbjct 84519 TCCACCTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTT 84574 >seq14380 Length=3375 Score = 100 bits (110), Expect = 6e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| | || ||| |||| |||| || || ||||||||||| | | | Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| ||||| || |||||||| ||||| || || || || ||||| || | | Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || | || || || ||||| |||||||||||||| | ||||| | ||| |||||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 192535 ATTTT 192539 || || Sbjct 181 ATCTT 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984192169120650