Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq889 87.8 5e-12 seq420 84.2 6e-11 >seq889 Length=882587 Score = 87.8 bits (96), Expect = 5e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || |||| ||| |||||||||| || |||||||||||| | |||| ||||| Sbjct 337232 TGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGT 337291 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 | || ||||| || || |||||||| | ||||| ||||| || |||||| |||| Sbjct 337292 TGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTG 337349 >seq420 Length=1412535 Score = 84.2 bits (92), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || ||| || ||||| || ||||| ||||| | | |||||||||||| || Sbjct 685017 ACCAGTCTCAGCTGTCTTGACAGCCGTGTCAATGAGACCTTCTCTACCACCCATAGCGTG 684958 Query 302667 GAAGAATAGCTC--TTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGC 302724 |||||| | ||| | |||| ||||| | | | ||| |||| ||||| || | Sbjct 684957 GAAGAAAAACTCCGTAGGGGTC--AGCCCGGCCAGGTAAGAGTTCTCCACGAAGCCTCTG 684900 Query 302725 GCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 |||||| | |||| ||| | ||||| || || || | || | | ||||| | Sbjct 684899 CTCTCGGGACCGTAGTCGTCTTTGATGAAGTGCGGAAGTGTGCGGTGTTTAAAGCCGAAC 684840 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 ||||| || || || || |||||||| || |||| Sbjct 684839 GGGATTCGTTTCCCCTCTACGTTCTGTTGCCCCA 684806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471387286988003