Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1860 134 2e-25 seq16545 111 2e-18 seq3879 111 2e-18 seq3632 111 2e-18 seq4393 102 1e-15 seq889 86.0 8e-11 >seq1860 Length=475879 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||||||| |||||||| |||| || Sbjct 118677 GCTTGGCCAGCTCGCCCGGCAGCAGCAGGCGCACGGCGGTTTGGATCTCCCGCGAAGTGA 118736 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| |||| || |||| | Sbjct 118737 TGGTCGAGCGCTTGTTGTAGTGCGCCAGCCGCGACGCCTCGGAAGCGATCCGCTCGAAGA 118796 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| | ||| | |||| |||||||||| ||| |||| Sbjct 118797 TGTCGTTGACGAAAGAGTTCATAATGCTCATGGCCTTGGAGGAGATGCCCGTGTCCGGGT 118856 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | || ||||| || || || || Sbjct 118857 GGACTTGCTTTAGGACTTTATA 118878 >seq16545 Length=1835 Score = 111 bits (122), Expect = 2e-18 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| | | ||| || ||||||||| | || || Sbjct 856 CAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAATGAGC 915 Query 1254428 CAGACGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 ||||||| || || | ||| ||||| |||| || ||||| ||||| ||||||||| Sbjct 916 CAGACGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTTCATG 973 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||| |||| ||||||||| |||||| ||||| || || ||||| ||||| Sbjct 974 ATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTTGTA 1032 >seq3879 Length=130427 Score = 111 bits (122), Expect = 2e-18 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| | | ||| || ||||||||| | || || Sbjct 53036 CAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAATGAGC 52977 Query 1254428 CAGACGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 ||||||| || || | ||| ||||| |||| || ||||| ||||| ||||||||| Sbjct 52976 CAGACGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTTCATG 52919 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||| |||| ||||||||| |||||| ||||| || || ||||| ||||| Sbjct 52918 ATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTTGTA 52860 Score = 93.3 bits (102), Expect = 5e-13 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||| ||| ||||||||||| | | ||| || ||||||||| | || || Sbjct 103624 CAGGCGCATGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGCAATGAGC 103683 Query 1254428 CAGACGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 ||| || || || | ||| ||||| |||| || ||||| ||||| ||||||||| Sbjct 103684 CAGGTGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTTCATG 103741 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||| |||| ||||||||| |||||| || || || || ||||| ||||| Sbjct 103742 ATACTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGTACTTGTTTCAGCACTTTGTA 103800 >seq3632 Length=153026 Score = 111 bits (122), Expect = 2e-18 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| | | ||| || ||||||||| | || || Sbjct 101269 CAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAATGAGC 101210 Query 1254428 CAGACGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 ||||||| || || | ||| ||||| |||| || ||||| ||||| ||||||||| Sbjct 101209 CAGACGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTTCATG 101152 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||| |||| ||||||||| |||||| ||||| || || ||||| ||||| Sbjct 101151 ATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTTGTA 101093 >seq4393 Length=91702 Score = 102 bits (112), Expect = 1e-15 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| | | ||| || ||||||||| | || | Sbjct 86343 CAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAATGAGT 86284 Query 1254428 CAGACGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 |||| || || || | ||| ||||| |||| || ||||| ||||| ||||||||| Sbjct 86283 CAGATGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTTCATG 86226 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||| |||| ||||||||| |||||| ||||| || || ||||| ||||| Sbjct 86225 ATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTTGTA 86167 >seq889 Length=882587 Score = 86.0 bits (94), Expect = 8e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| ||| | ||| ||||||||||| || | | || |||||||||||||||||| Sbjct 337235 ACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGC 337294 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | || |||| ||||||||||| | |||||| || | ||| ||||| |||| | | Sbjct 337295 TCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACT 337354 Query 1628282 CGACGATGGCCGACCAGATCTG 1628303 ||| |||||| |||| | ||| Sbjct 337355 CGATGATGGCGTACCACAGCTG 337376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105266565998623