Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1120 132 4e-26 seq14380 113 4e-20 seq889 82.4 7e-11 >seq1120 Length=750286 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || |||||||| || || || || || || ||| Sbjct 84572 GATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 84513 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| || || ||||| || || || |||||||| ||||| || || Sbjct 84512 TGATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGACCA 84453 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| |||||||||| || || |||||||| ||| | | |||| || || || Sbjct 84452 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAA 84393 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || || || || ||| |||| |||| || || Sbjct 84392 CATTCAGAAAGAGTCAACCCTGCATTTAGTGCTGCGTCTGCGTGGTGG 84345 >seq14380 Length=3375 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || |||||||| || || || || || || ||| Sbjct 183 GATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGAGCCCAG 124 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| || || ||||| || || || |||||||| ||||| || || Sbjct 123 TGATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGACCA 64 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| ||| |||||||||| || || |||||||| ||| Sbjct 63 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGAT 27 >seq889 Length=882587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 ||| ||||| || | |||| ||||||| || | |||| |||||||||||||| || Sbjct 337215 CACCTCGTCCTGGCTGGTGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGT 337274 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 || | || || || ||||| || | ||| || || || ||||||| ||| || || || Sbjct 337275 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGT 337334 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATG 139251 |||||| ||| || | ||| || ||| Sbjct 337335 GCCAGTCTCCGTCTGAGACTCGATGATG 337362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449769272333320