Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1860 183 5e-40 seq3632 159 5e-33 seq16545 154 2e-31 seq3879 154 2e-31 seq4393 152 8e-31 seq3126 125 1e-22 seq889 93.3 7e-13 >seq1860 Length=475879 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 118638 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGCA 118697 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||| |||||||| || | ||| || ||||||||| | Sbjct 118698 GCAGCAGGCGCACGGCGGTTTGGATCTCCCGCGAAGTGATGGTCGAGCGCTTGTTGTAGT 118757 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||||| |||| || |||| ||||||||||| || ||||||| Sbjct 118758 GCGCCAGCCGCGACGCCTCGGAAGCGATCCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 118817 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| |||||||||| ||| ||||| || ||||| || || || | Sbjct 118818 TAATGCTCATGGCCTTGGAGGAGATGCCCGTGTCCGGGTGGACTTGCTTTAGGACTTTAT 118877 Query 1485710 AAAC 1485713 | || Sbjct 118878 ACAC 118881 >seq3632 Length=153026 Score = 159 bits (176), Expect = 5e-33 Identities = 184/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| |||||||| || |||||||| |||| | || || ||| Sbjct 101333 TGTACTTGGTGACGGCCTTTGTACCCTCAGACACGGCGTGTTTGGCTAACTCCCCCGGCA 101274 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| || ||||||||| Sbjct 101273 GCAGCAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAAT 101214 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||||| ||| || || | ||| ||||| |||| || ||||| ||||| ||||| Sbjct 101213 GAGCCAGACGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTT 101156 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||||||||| |||||| ||||| || || ||||| || Sbjct 101155 CATGATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTT 101096 Query 1485708 GTAAAC 1485713 |||||| Sbjct 101095 GTAAAC 101090 >seq16545 Length=1835 Score = 154 bits (170), Expect = 2e-31 Identities = 183/246 (74%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| |||||||| || |||||||| |||| | || || ||| Sbjct 792 TGTATTTGGTGACGGCCTTTGTACCCTCAGACACGGCGTGTTTGGCTAACTCCCCCGGCA 851 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| || ||||||||| Sbjct 852 GCAGCAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAAT 911 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||||| ||| || || | ||| ||||| |||| || ||||| ||||| ||||| Sbjct 912 GAGCCAGACGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTT 969 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||||||||| |||||| ||||| || || ||||| || Sbjct 970 CATGATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTT 1029 Query 1485708 GTAAAC 1485713 |||||| Sbjct 1030 GTAAAC 1035 >seq3879 Length=130427 Score = 154 bits (170), Expect = 2e-31 Identities = 183/246 (74%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| |||||||| || |||||||| |||| | || || ||| Sbjct 53100 TGTACTTAGTGACGGCCTTTGTACCCTCAGACACGGCGTGTTTGGCTAACTCCCCCGGCA 53041 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| || ||||||||| Sbjct 53040 GCAGCAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAAT 52981 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||||| ||| || || | ||| ||||| |||| || ||||| ||||| ||||| Sbjct 52980 GAGCCAGACGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTT 52923 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||||||||| |||||| ||||| || || ||||| || Sbjct 52922 CATGATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTT 52863 Query 1485708 GTAAAC 1485713 |||||| Sbjct 52862 GTAAAC 52857 Score = 150 bits (166), Expect = 3e-30 Identities = 182/246 (74%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| |||||||| || |||||||| |||| | || || ||| Sbjct 103560 TGTACTTGGTGACGGCCTTTGTACCCTCAGACACGGCGTGTTTGGCTAACTCCCCCGGCA 103619 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| ||| ||||||||||| | || ||| || ||||||||| Sbjct 103620 GCAGCAGGCGCATGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGCAAT 103679 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | |||||| || || || | ||| ||||| |||| || ||||| ||||| ||||| Sbjct 103680 GAGCCAGGTGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTT 103737 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||||||||| |||||| || || || || ||||| || Sbjct 103738 CATGATACTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGTACTTGTTTCAGCACTTT 103797 Query 1485708 GTAAAC 1485713 |||||| Sbjct 103798 GTAAAC 103803 >seq4393 Length=91702 Score = 152 bits (168), Expect = 8e-31 Identities = 183/247 (74%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| |||||||| || |||||||| |||| | || || ||| Sbjct 86407 TGTACTTGGTGACGGCCTTTGTACCCTCAGACACGGCGTGTTTGGCTAACTCCCCCGGCA 86348 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| || ||||||||| Sbjct 86347 GCAGCAGGCGCACGGCTGTCTGGATCTCCCTGGAAGTGATGGTCGAGCGCTTGTTGTAAT 86288 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | ||| || || || | ||| ||||| |||| || ||||| ||||| ||||| Sbjct 86287 GAGTCAGATGGGACGCTTC--TCCCGCAATGCGCTCGAAAATATCGTTCACAAAGGAGTT 86230 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||||||||| |||||| ||||| || || ||||| || Sbjct 86229 CATGATGCTCATCGCCTTGGAGGAGATGCCGGTGTCGGGATGCACTTGTTTCAGCACTTT 86170 Query 1485708 GTAAACA 1485714 ||||||| Sbjct 86169 GTAAACA 86163 >seq3126 Length=216236 Score = 125 bits (138), Expect = 1e-22 Identities = 179/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| ||| |||| || |||||||| |||| | || || ||| Sbjct 66673 TGTACTTGGTGACGGCCTTTGTATCCTCAGACACGGCGTGTTTGGCTAACTCCCCCAGCA 66732 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||| | |||||||||| | || ||| || || |||||| Sbjct 66733 GCAGCAGGCGCACGACTATCTGGATCTCCCTGGAAGTGATGGTCGAGCACTTGTTGTAAT 66792 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCG--ATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||||| ||| || || | ||| |||| |||| || ||||| ||||| ||||| Sbjct 66793 GAGCCAGACGGGACGCTTC--TCCCGCAATGCACTCGAAAATATCGTTCACAAAGGAGTT 66850 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| ||||||| || ||| ||||| || || ||||| || Sbjct 66851 CATGATGCTCATCGCCTTGGAAGAGATGCTGGTGTTGGGATGCACTTGTTTCAGCACTTT 66910 Query 1485708 GTAAACAAAG 1485717 ||||||| || Sbjct 66911 GTAAACATAG 66920 >seq889 Length=882587 Score = 93.3 bits (102), Expect = 7e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| ||| ||||| ||||||||||| || | |||||||||||||||||||||||| Sbjct 337235 ACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGC 337294 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || |||| ||||||||||| | |||||| || | || ||||| |||| | | Sbjct 337295 TCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACT 337354 Query 2071694 TGACGATGGCCGACCA 2071709 || |||||| |||| Sbjct 337355 CGATGATGGCGTACCA 337370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913819038892541