Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1120 174 3e-38 seq14380 140 6e-28 seq1815 89.7 1e-12 seq983 89.7 1e-12 >seq1120 Length=750286 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| ||||| ||||| || || |||||||| || || || |||| Sbjct 84343 TACCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAG 84402 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||||||||| || | ||||| || |||| Sbjct 84403 ACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAG 84462 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| |||||||| || || ||||||||||| |||||| | || || | Sbjct 84463 GGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCA 84522 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || |||| || || ||||| |||||||| Sbjct 84523 CCTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCAT 84571 >seq14380 Length=3375 Score = 140 bits (154), Expect = 6e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || || ||||| ||| | | || ||||| || || || ||||||||||| || | Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||| || ||||| |||||||||||||| |||||||| || || ||||||||||| ||| Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || || || || | ||| || || || || |||| || || ||||| |||||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 82809 AT 82810 || Sbjct 181 AT 182 >seq1815 Length=477142 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || || |||||||||||| | || || || || || ||| | || || ||||| ||||| Sbjct 51698 GCCTTGTGGTGGTACTATGTCTCCAAGGGGATTGAGTACCTGGACACTGTGTTCTTCATC 51757 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || |||| || || || ||||| || || | || || ||||| || | || |||||| Sbjct 51758 CTGCGGAAGAAATTCAACCAGGTCAGCTTCCTCCATGTGTATCACCACTGCACCATGTTT 51817 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 ||| | | ||| | || ||||| ||| | || ||||| ||| Sbjct 51818 ACTCTCTGGTGGATTGGAATTAAGTGGGTGGCAGGAGGACAA 51859 >seq983 Length=821879 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| |||||||| || || ||||||||||| |||||| | || || || || Sbjct 334026 CCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCA 334085 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || || || || |||| || || ||||| |||||||| Sbjct 334086 AGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCAT 334129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981540144715641