Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1120 127 2e-24 seq14380 104 2e-17 seq889 95.1 1e-14 >seq1120 Length=750286 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| || ||||| || || ||| | | | || || || Sbjct 84366 AAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCCA-TCTTCCAG 84424 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || ||||| ||||| |||||||| |||||||| || || Sbjct 84425 CTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAAT 84484 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || |||||||||| || | ||||| |||||| || Sbjct 84485 CTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGTGATGGTTTTACC 84544 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| || || |||||||| Sbjct 84545 AGTCAGAGTTTTCACAAAGATCTGCAT 84571 >seq14380 Length=3375 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || || ||||| ||||| |||||||| |||||||| Sbjct 28 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTTA 87 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | |||| || || |||||||||| || | |||| | Sbjct 88 TCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGAGTGATG 147 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||||||||| || || |||||||| Sbjct 148 GTTTTACCAGTCAGAGTTTTCACAAAGATCTGCAT 182 >seq889 Length=882587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| ||| || | ||||||| || | ||| | |||||| || || || ||||| ||| Sbjct 337218 CTCGTCCTGGCTGGTGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCC 337277 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| || |||||||| |||||||| ||||||||||| | |||||| || ||| Sbjct 337278 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCC 337337 Query 148970 AGTTTCC 148976 ||| ||| Sbjct 337338 AGTCTCC 337344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483282910259560