Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1108 143 3e-29 >seq1108 Length=757687 Score = 143 bits (158), Expect = 3e-29 Identities = 445/671 (66%), Gaps = 27/671 (4%) Strand=Plus/Plus Query 176976 ACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGT 177035 || |||||||||| |||| || | ||| ||||| || || ||||| |||| ||| | | Sbjct 542979 ACATGAATGAAAGAGTCTGATGGAATGTAGTTTTCATAGTTTTCTCTTGATGGTCCTAAT 543038 Query 177036 ACTATGGGTACCGCACCTGCCAT-AAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 |||| || || | ||||||| ||| || || ||||| || || | || ||| | Sbjct 543039 ACTACTGGAACAGAGCCTGCCAGCAAGGCATTA-TATAGTTTCTCAGTTACGTAATCCTT 543097 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACA---GGAAGATAGTAGCGGGATGAA 177151 ||| | || |||||||| | ||||| |||||||| |||| ||||||| | || || Sbjct 543098 GTGGATTGAATTCTCAAAGGAAAGATAAAATTTACAACTGGAA-ATAGTAG--GCATTAA 543154 Query 177152 G--TCA-TCA-TCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGT 177207 | | ||| || ||||| ||||| | | | | || ||| | || || |||| Sbjct 543155 ACTTGAGTCACTCAGGTAT----TCTCCAAATGCTTGGCCATATGTAGAGATTTCAATGT 543210 Query 177208 GTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGA 177267 | ||| | ||||| ||| || || ||| | || || ||||| ||||| || | Sbjct 543211 GCTTATTTAGCTCATTGTAATACTTCACTCTAGCATGCTCAGGATTCCAGTTGCTTACAA 543270 Query 177268 CCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATA-CTAATGCAGTGTCTCTG 177326 ||||||| | | |||| | || ||| || ||| | | | || || || ||| Sbjct 543271 CCCAGCAGATGAGCTTGTTTTTACTGGGTAC----TTCAAAATCAAAAGCCGT-TCTGCT 543325 Query 177327 AGCGTTAGTGATCC-ATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAG 177385 | | | || || ||| ||||| |||||||| ||||| || || || || | || || Sbjct 543326 TGTGATCAGGAGCCCATAAGGCACCTGAATATCAGAGTCCCGCCTATATGTCAGGGTTAG 543385 Query 177386 ATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCAT 177445 ||||| |||| | | ||| | || ||| ||| | | || |||||||||||||| Sbjct 543386 GTTGAACAGGTGCTGAAGACCATTCTTCTGTGGGGTGTGAGTTGGTGATTCTAAGTTCAT 543445 Query 177446 CCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGT--ATAAGGATCTATA 177503 ||| ||||| || ||||||| |||||| | | |||| ||| | ||| || | Sbjct 543446 CCAGATCCATTTCTGAAAGGGTGGTCTAGCAAGCTGTGGTA-AGTTGGTTAGG-TCCCAA 543503 Query 177504 CTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACG 177563 || || |||| |||||||| || | |||| || | | | || | ||| | || || Sbjct 543504 CTAATGTCTCGGTGGTGAATGAGAATAGCATGGGATCTATTGTATAGAGACTTATCCACA 543563 Query 177564 GTAACGTGACACGCACGTATGTTAAATCTGGAGCTACACGCATTTAGATCAAATGGGTGG 177623 || | ||| ||| || | ||||| || ||| | ||| | ||| |||| ||| | || Sbjct 543564 GTTAAGTGGCACCCATGAATGTTGAACAAGGATCCACAAGAATTAAGATTAAACGTTTGC 543623 Query 177624 CCGTAGGGCCA 177634 || | ||||| Sbjct 543624 CCAAATGGCCA 543634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578267009502400