Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq9619 104 7e-19 seq2470 104 7e-19 seq493 104 7e-19 seq11999 100 9e-18 seq2017 98.7 3e-17 seq940 98.7 3e-17 seq690 98.7 3e-17 seq7445 89.7 2e-14 seq52 84.2 7e-13 seq129 78.8 3e-11 >seq9619 Length=7397 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 7313 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 7254 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7253 CCGGGTTTCGGC 7242 >seq2470 Length=316257 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||| | Sbjct 190132 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGATCCCTGGTTCAATC 190191 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 190192 CCGGGTTTCAGC 190203 Score = 95.1 bits (104), Expect = 4e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||| | ||||||||||||| ||||| | Sbjct 109767 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAATACCTAAAGGTCCCTGATTCAATC 109826 Query 2829 CCGGGCTTCA 2838 ||||| |||| Sbjct 109827 CCGGGATTCA 109836 Score = 86.0 bits (94), Expect = 2e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||||| |||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 168809 GCTGAAATAGCTCAGTTGGGAGAGCATTAAACTGAAGATCTAAAGGTCCCGGGTT 168863 >seq493 Length=1278020 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 936168 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 936109 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 936108 CCGGGTTTCGGC 936097 >seq11999 Length=4996 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3383 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 3442 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 3443 ATCCCGGGTTTCGGC 3457 >seq2017 Length=416365 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| | Sbjct 343059 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 343000 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 342999 CCGGGTTTCGGC 342988 >seq940 Length=847764 Score = 98.7 bits (108), Expect = 3e-17 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 611868 AAATAGCTCAGTTGGGAGAGTATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 611809 Query 2833 GCTT 2836 | || Sbjct 611808 GTTT 611805 >seq690 Length=1048657 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 466877 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 466936 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 466937 CCGGGTTTCGGC 466948 >seq7445 Length=11280 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 || || |||||||||||||||||||||| |||||| |||||||||| |||||||||| || Sbjct 5738 CTAAAATAGCTCAGTTGGGAGAGCATTAAACTGAAAATCTAAAGGTTCCTGGTTCAATCC 5679 Query 2830 CGGGCTTCA 2838 ||| |||| Sbjct 5678 TGGGTTTCA 5670 >seq52 Length=3167360 Score = 84.2 bits (92), Expect = 7e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 2493918 GCTGAAACAGCCCAGTTGGGAGAGTGTTAGGCTGAAGATCTAAAGGTCCCTGGTTCAATT 2493977 Query 2829 CCGGGCTTCAG 2839 | ||| ||||| Sbjct 2493978 CTGGGTTTCAG 2493988 >seq129 Length=2405943 Score = 78.8 bits (86), Expect = 3e-11 Identities = 56/63 (89%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 2764 TTATGGCTGAAGTAGCTCAGT-TGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 || |||| | || |||||||| ||||||||| |||||||||||||||||||||||| ||| Sbjct 1758891 TTGTGGCAGTAGCAGCTCAGTCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGT 1758832 Query 2823 TCA 2825 ||| Sbjct 1758831 TCA 1758829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15845644212255