Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1860 156 6e-32 seq889 98.7 1e-14 seq16545 93.3 6e-13 seq3879 93.3 6e-13 seq3632 93.3 6e-13 seq4393 87.8 3e-11 >seq1860 Length=475879 Score = 156 bits (172), Expect = 6e-32 Identities = 148/187 (79%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| || |||||||| || ||||||||||| |||| || |||| Sbjct 118840 CTCCTCCAAGGCCATGAGCATTATGAACTCTTTCGTCAACGACATCTTCGAGCGGATCGC 118781 Query 725018 CACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 ||||||| ||||| ||||||| || |||||||||| || ||| |||| ||| Sbjct 118780 TTCCGAGGC--GTCGCGGCTGGCGCACTACAACAAGCGCTCGACCATCACTTCGCGGGAG 118723 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| ||||||||||||||| | ||| ||||| ||||||| |||||||||||||||| Sbjct 118722 ATCCAAACCGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAG 118663 Query 725136 GGCACCA 725142 ||||||| Sbjct 118662 GGCACCA 118656 >seq889 Length=882587 Score = 98.7 bits (108), Expect = 1e-14 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | ||||| ||||| || |||||||| ||| Sbjct 337376 CAGCTGTGGTACGCCATCATCGAGTCTCAGACGGAGACTGGCACCCCTTACATGGTTTAC 337317 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 ||||||||| |||| || ||||||||||||||||||||||||| | || | || Sbjct 337316 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGTAGTAA 337258 Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232 ||||||||| ||| | ||| ||| Sbjct 337257 CCTGTGCACGGAGGTTGTCGAGT 337235 >seq16545 Length=1835 Score = 93.3 bits (102), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || ||||| ||| |||| |||| ||| |||| | ||| Sbjct 1032 TACAAAGTGCTGAAACAAGTGCATCCCGACACCGG-----CATC-TCCTCCAAGGCGATG 979 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT--CGGCACCGAGGCCGGTC 725031 ||||||||||| ||||| ||||| || |||| ||||| ||| | || || | Sbjct 978 AGCATCATGAACTCCTTTGTGAACGATATTTTCGAGCGCATTGCGGGA--GAAGCGTCCC 921 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | | |||||||||| || ||| | | ||||||||||| ||||||| Sbjct 920 GTCTGGCTCATTACAACAAGCGCTCGACCATCACTTCCAGGGAGATCCAGACAGCCGTGC 861 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| || || | |||| |||||||| || ||||| || Sbjct 860 GCCTGCTGCTGCCGGGGGAGTTAGCCAAACACGCCGTGTCTGAGGGTAC 812 >seq3879 Length=130427 Score = 93.3 bits (102), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || ||||| ||| |||| |||| ||| |||| | ||| Sbjct 52860 TACAAAGTGCTGAAACAAGTGCATCCCGACACCGG-----CATC-TCCTCCAAGGCGATG 52913 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT--CGGCACCGAGGCCGGTC 725031 ||||||||||| ||||| ||||| || |||| ||||| ||| | || || | Sbjct 52914 AGCATCATGAACTCCTTTGTGAACGATATTTTCGAGCGCATTGCGGGA--GAAGCGTCCC 52971 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | | |||||||||| || ||| | | ||||||||||| ||||||| Sbjct 52972 GTCTGGCTCATTACAACAAGCGCTCGACCATCACTTCCAGGGAGATCCAGACAGCCGTGC 53031 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| || || | |||| |||||||| || ||||| || Sbjct 53032 GCCTGCTGCTGCCGGGGGAGTTAGCCAAACACGCCGTGTCTGAGGGTAC 53080 >seq3632 Length=153026 Score = 93.3 bits (102), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || ||||| ||| |||| |||| ||| |||| | ||| Sbjct 101093 TACAAAGTGCTGAAACAAGTGCATCCCGACACCGG-----CATC-TCCTCCAAGGCGATG 101146 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT--CGGCACCGAGGCCGGTC 725031 ||||||||||| ||||| ||||| || |||| ||||| ||| | || || | Sbjct 101147 AGCATCATGAACTCCTTTGTGAACGATATTTTCGAGCGCATTGCGGGA--GAAGCGTCCC 101204 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | | |||||||||| || ||| | | ||||||||||| ||||||| Sbjct 101205 GTCTGGCTCATTACAACAAGCGCTCGACCATCACTTCCAGGGAGATCCAGACAGCCGTGC 101264 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| || || | |||| |||||||| || ||||| || Sbjct 101265 GCCTGCTGCTGCCGGGGGAGTTAGCCAAACACGCCGTGTCTGAGGGTAC 101313 >seq4393 Length=91702 Score = 87.8 bits (96), Expect = 3e-11 Identities = 161/231 (70%), Gaps = 14/231 (6%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| || || ||||| ||| |||| |||| ||| |||| | ||| Sbjct 86167 TACAAAGTGCTGAAACAAGTGCATCCCGACACCGG-----CATC-TCCTCCAAGGCGATG 86220 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT--CGGCACCGAGGCCGGTC 725031 ||||||||||| ||||| ||||| || |||| ||||| ||| | || || ||| Sbjct 86221 AGCATCATGAACTCCTTTGTGAACGATATTTTCGAGCGCATTGCGGGA--GAAGC--GTC 86276 Query 725032 GC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | ||| | | | |||||||||| || ||| | | ||||||||||| ||||| Sbjct 86277 CCATCTGACTCATTACAACAAGCGCTCGACCATCACTTCCAGGGAGATCCAGACAGCCGT 86336 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||||| | ||| || || | |||| |||||||| || ||||| || Sbjct 86337 GCGCCTGCTGCTGCCGGGGGAGTTAGCCAAACACGCCGTGTCTGAGGGTAC 86387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175610265508678