Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq470 120 4e-22 seq889 95.1 2e-14 >seq470 Length=1305644 Score = 120 bits (132), Expect = 4e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||| ||||| | |||||||||||| || | |||||||| || || || || | Sbjct 601066 CCTCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCT 601007 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||| | |||||| || ||||| || ||||| |||||||| |||||||||| Sbjct 601006 TCAGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATG 600947 Query 39759 CAACAA 39764 | |||| Sbjct 600946 CCACAA 600941 Score = 96.9 bits (106), Expect = 5e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||| |||||||||||||| || || || ||||||||||||||||| | ||| |||||| | Sbjct 590504 TACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATG 590445 Query 40174 ATATTGTATTGGAAAAATAACAAATC 40199 || || ||||||||||| ||||||| Sbjct 590444 GTACTGGATTGGAAAAATGACAAATC 590419 >seq889 Length=882587 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 69327 CTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTT 69386 ||| || || || |||||||| ||||| || ||||| || ||||| || ||||| |||| Sbjct 337245 CTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 337304 Query 69387 ACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||||||||||||| || | || || ||||| || ||||||| ||||| || Sbjct 337305 GCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACTCGATGAT 337361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686712867851160