Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq470 120 2e-22 >seq470 Length=1305644 Score = 120 bits (132), Expect = 2e-22 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| || |||||||||| ||||| ||||| || ||||||||||| || || Sbjct 593440 CAAGAAGTGCAAATAACAGAAGCACGCTGTTTCTATGGTTTCCAAATTGCCATGGAGAAC 593499 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAA 44016 |||||||| ||||||||||||||||| || ||||| ||||| || Sbjct 593500 ATTCATTCAGAAATGTACAGTCTTCTTATTGATACCTACATTAA 593543 Score = 98.7 bits (108), Expect = 8e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 44133 TTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTT 44192 |||| || ||||||| ||| ||||| || || || || || || ||||| | ||||| | Sbjct 600941 TTGTGGCATTTGCAGCTGTAGAAGGGATCTTTTTCTCTGGTTCATTTGCTTCTATATTCT 601000 Query 44193 GGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTG 44252 || | ||||||||||| |||||||||||||||| ||||| || || | || || || | Sbjct 601001 GGCTGAAGAAACGAGGACTGATGCCTGGGTTGACCTTTTCTAACGAACTTATTAGCCGAG 601060 Query 44253 ATGA 44256 |||| Sbjct 601061 ATGA 601064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397345464878095