Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1120 104 2e-17 seq14380 86.0 5e-12 >seq1120 Length=750286 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || ||||| | || || ||||| ||||| |||||||| | Sbjct 84345 CCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 84404 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||| || || || | || ||||||||||| || || || Sbjct 84405 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGG 84464 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| || | |||| | || || ||| || || Sbjct 84465 ATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACC 84524 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| || |||||||||||||||||||| ||||| Sbjct 84525 TCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCAT 84571 >seq14380 Length=3375 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 || |||||||| || |||| | ||||| ||||| || || || | || |||||| Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 ||||| || || || | || || ||||| |||||| || | |||| | || Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 || ||| || || || ||||| || | ||| || |||||||||||||||||||| ||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 27246 AT 27247 || Sbjct 181 AT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424816222954728