Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq470 87.8 2e-12 seq889 86.0 8e-12 >seq470 Length=1305644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| || ||||||||||||||||||||||| || || ||| ||| || ||||| Sbjct 605222 TACTCCCCTACACGCTTCTCAAAGAAGTTGGTCTTGCCTTCCAGGGAAATATTCTCCATG 605163 Query 122431 AAGTCAAATGGATTCT 122446 |||||||||||||||| Sbjct 605162 AAGTCAAATGGATTCT 605147 >seq889 Length=882587 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | ||| || ||| || || |||| |||| ||| Sbjct 337231 GTGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGG 337290 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||| ||||||| || |||||||| | |||||| || || || ||||||||||| Sbjct 337291 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGA 337350 Query 111398 GATTTGAGAATAGCCTTCCA 111417 || | || || || | ||| Sbjct 337351 GACTCGATGATGGCGTACCA 337370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627852861722400