Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq187 96.9 4e-15 seq889 93.3 5e-14 >seq187 Length=2081563 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/110 (81%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||||||||| ||| || || || ||||| ||||||||||| ||| ||| || |||||| Sbjct 727391 TAGCTTTTGC-TGCTGTTGAGGGGATCTTTTTCTCTGGCTCCTTCGCTGCCATCTTCTGG 727333 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || || || || | |||||||| ||||||| ||||||||| ||||| || Sbjct 727332 CTAAAGAAACGGGATCTCATGCCTGGCCTGACTTTCTCCAATGAGCTCAT 727283 >seq889 Length=882587 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| |||| | ||||| | || ||||||| ||| ||||||||||||| Sbjct 337218 CTCGTCCTGGCTGGTGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCC 337277 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| |||||||||||||| |||||| || || || Sbjct 337278 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCC 337337 Query 79200 GGTCTC 79205 ||||| Sbjct 337338 AGTCTC 337343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548368340157360