Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq618 102 9e-17 seq1408 91.5 2e-13 >seq618 Length=1115849 Score = 102 bits (112), Expect = 9e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| |||||||||||||| | || || |||||||| Sbjct 430140 GTGAAGATGTATCGAGGGCTGGCAGCATCCTTGCCACCATGTAACCTGGTACCAAACTGG 430199 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||||| ||||||| |||||||| ||||||||||| || | Sbjct 430200 CCAATGGGCTGCAGCAAGTTGATGTTGTTGCTACCCACGAAGTTCTGAGCCAAGTTGATG 430259 Query 152149 ATCGTGCCC 152157 || || ||| Sbjct 430260 ATTGTCCCC 430268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||||||||||||||||| | | ||||| || || Sbjct 430140 GTGAAGATGTATCGAGGGCTGGCAGCATCCTTGCCACCATGTAACCTGGTACCAAACTGG 430199 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | |||| || | ||| | ||||||| ||||| ||||| ||||||||||||| Sbjct 430200 CCAATGGGCTGCAGCAAGTTGATGTTGTTGCTACCCACGAAGTTCTGAGCCAAGTTGA 430257 >seq1408 Length=624408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | || |||||||| ||||| ||| ||| || ||||| ||||| Sbjct 162156 GTGAAAATGTAACGGGGACTGGCAGCATCTTTGCCCCCATGAAGCCGGGTACCAAATTGA 162097 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || | || | |||||| ||||||||||| || || || |||||| Sbjct 162096 CCAATGGGCTGTAACAAATTTACATTGTTGCTTCCCACAAAGTTCTGGGCTAAATTGACA 162037 Query 117425 ATCGT 117429 || || Sbjct 162036 ATGGT 162032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547059913476200