Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14380 143 3e-29 seq33 104 3e-17 seq889 100 3e-16 seq618 91.5 2e-13 seq983 84.2 2e-11 >seq14380 Length=3375 Score = 143 bits (158), Expect = 3e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || || || || ||||||||||| ||| | || Sbjct 182 ATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGAGCCCAGT 123 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | ||||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 122 GATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGACCAA 63 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 62 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAA 4 >seq33 Length=3581497 Score = 104 bits (114), Expect = 3e-17 Identities = 104/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 |||| ||||| |||||| | || || |||||||| ||||| || || |||| || |||| Sbjct 769018 TTCCCCCAGATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCC 768959 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | | ||||| || ||||||||||||| ||||| || || || |||||||| || |||| Sbjct 768958 TGTCTGACTACAACATCCAAAAGGAATCTACTCTGCACCTGGTGTTGCGTCTCCGTGGTG 768899 Query 27632 GACAAGTTTAAAGT 27645 | ||| | ||||| Sbjct 768898 G-CAATTGAAAAGT 768886 >seq889 Length=882587 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 ||||||| | |||||||||| ||| | |||| || || |||||||| | |||||| Sbjct 337235 ACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGC 337294 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| ||||||||||| |||||| ||||| || ||||| ||| |||| Sbjct 337295 TCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACT 337354 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG 81110 || |||||||| ||| | || | || || ||||| || || Sbjct 337355 CGATGATGGCGTACCACAGCTGCTGAGCTTTCACCACTTTCCG 337397 >seq618 Length=1115849 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 ||| || || ||||| | ||||||||||| || ||| || ||| | ||||| || | Sbjct 430268 GGGGACAATCATCAACTTGGCTCAGAACTTCGTGGGTAGCAACAACATCAACTTGCTGCA 430209 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 ||| ||| |||||||| ||| || | ||||||||||||||||| ||| | || || Sbjct 430208 GCCCATTGGCCAGTTTGGTACCAGGTTACATGGTGGCAAGGATGCTGCCAGCCCTCGATA 430149 Query 32241 CATCTTCACC 32250 |||||||||| Sbjct 430148 CATCTTCACC 430139 >seq983 Length=821879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || || || || ||||||||||| ||| | || Sbjct 334129 ATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGAGCCCAGT 334070 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| |||| | ||||| || |||||||| ||||| || Sbjct 334069 GATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGG 334026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570147726087280