Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1120 116 2e-21 seq14380 87.8 1e-12 >seq1120 Length=750286 Score = 116 bits (128), Expect = 2e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| ||||| || || ||| || |||||||| || || || || || || Sbjct 84354 AGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGT 84413 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||| || | |||||||||||| || || | ||| ||| Sbjct 84414 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCC 84473 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | ||||| | |||||| || | |||||| || | ||| Sbjct 84474 TTATC-CTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGT 84532 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||||||| || | ||||||||||| |||||||| ||| Sbjct 84533 GATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTTG 84575 >seq14380 Length=3375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 34525 ATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGC 34584 ||||| || || || || || || | ||||| || || || || ||||| || | |||| Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 34585 TGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGT 34643 |||||||| || || | ||| ||||| || ||| || | ||||| | |||||| Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATC-CTGAATCTTGGCCTTAACATTTTCAATTGT 119 Query 34644 GTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703 || | |||||| || | || || |||||||| || | ||||||||||| ||||| Sbjct 120 ATCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTG 179 Query 34704 CATGTTG 34710 ||| ||| Sbjct 180 CATCTTG 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314642071632827