Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq272 150 2e-31 >seq272 Length=1747054 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||| |||||| ||||| || || || | |||||||| ||||| || | ||| Sbjct 1531209 GATCTCCCTCAGATGGCTCTCCCTCCATGTCATGCACTCTGCCAGTTCTATGTATCAAAT 1531268 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || ||||| ||||||||||| || | ||||||||||||||||| || || || ||| Sbjct 1531269 GGTGAACTGTCTTGCCAGCTCTACCAGAGGTCGGGAGACATGGGGTTGGGTGTCCCCTTC 1531328 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || |||||||||||| || | || || |||||||| ||||| Sbjct 1531329 AATATTGCTAGTTACTCTTTACTTACTTACATGATTGCTCA 1531369 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 ||||| |||||||| || || | || |||||||||||| ||||| || || || |||||| Sbjct 1531369 TGAGCAATCATGTAAGTAAGTAAAGAGTAACTAGCAATATTGAAGGGGACACCCAACCCC 1531310 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| | || ||||||||||| ||||| || ||||| | || ||||| ||| Sbjct 1531309 ATGTCTCCCGACCTCTGGTAGAGCTGGCAAGACAGTTCACCATTTGATACATAGAACTGG 1531250 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | || || || ||||| |||||| |||||||||| Sbjct 1531249 CAGAGTGCATGACATGGAGGGAGAGCCATCTGAGGGAGATC 1531209 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380 |||||| ||||| ||||| || | || ||||| | ||| ||||||| | ||| || | Sbjct 1527425 GGGGGTCAAGATATGGGATGCCAATGGATCTCGGCAATTTTTGGACAAACAGGGTTTAAC 1527484 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 ||| | ||||| || |||||||| ||||| || || ||||| |||||||||||||| || Sbjct 1527485 ATCCAGAGAGGAAGGAGACTTGGGTCCGGTTTATGGTTTCCAATGGAGACACTTTGGAGC 1527544 Query 34441 GGAGTAT 34447 || ||| Sbjct 1527545 TGAATAT 1527551 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || || |||||||||||||| ||||| || || ||||| |||||||| || ||||| Sbjct 1527551 ATATTCAGCTCCAAAGTGTCTCCATTGGAAACCATAAACCGGACCCAAGTCTCCTTCCTC 1527492 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | |||| || ||| | ||||||| ||| | ||||| || | || ||||| ||||| Sbjct 1527491 TCTGGATGTTAAACCCTGTTTGTCCAAAAATTGCCGAGATCCATTGGCATCCCATATCTT 1527432 Query 7018 CACCCCC 7024 |||||| Sbjct 1527431 GACCCCC 1527425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448134538753680