Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1120 150 4e-31 seq14380 140 8e-28 seq983 84.2 5e-11 >seq1120 Length=750286 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || |||||||| || ||||| || || | || || | |||||||||||||||| Sbjct 84369 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGC 84428 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || || |||||||||||||| | ||||||||| ||||| ||||| Sbjct 84429 TTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTG 84488 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || || ||| | || ||||| || ||||| || || || || Sbjct 84489 GCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCAGTC 84548 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| | |||||| || Sbjct 84549 AGAGTTTTCACAAAGATCTGCATCTT 84574 >seq14380 Length=3375 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 210933 ATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGT 210992 ||||| || || | || || | ||||||||||||||||||||| || ||||| || || Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 |||||||||||||| | ||||||||| ||||| ||||| || || ||||| || || Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||| | || ||||| |||||||| || || || || ||||| || ||||| | |||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 211113 ATTTT 211117 || || Sbjct 181 ATCTT 185 >seq983 Length=821879 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||| || || | || || | ||||||||||||||||||||| || |||| Sbjct 327459 CTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGA 327518 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| | |||| Sbjct 327519 TCAGACGCTGTTGGTCAGGAGGGATTCCT 327547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158813100540935