Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq272 120 2e-22 seq1046 91.5 1e-13 >seq272 Length=1747054 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| |||| |||||| |||||||| || || | |||||| || || || || ||||| Sbjct 1531381 AGCCCTGTGATGTGAGCAATCATGTAAGTAAGTAAAGAGTAACTAGCAATATTGAAGGGG 1531322 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | ||||||||| || |||||||||||||||||||| || || || || | Sbjct 1531321 ACACCCAACCCCATGTCTCCCGACCTCTGGTAGAGCTGGCAAGACAGTTCACCATTTGAT 1531262 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || ||||| || | ||||| || ||||| || ||||| Sbjct 1531261 ACATAGAACTGGCAGAGTGCATGACATGGAGGGAGAGCCAT 1531221 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG--TGCTCGA 30074 || || ||||| ||||| || || ||||| |||| |||||| || || ||| || | | Sbjct 1527538 AAGTGTCTCCATTGGAAACCATAAACCGGACCCAAGTCTCCTTCCTCTCTGGATGTT--A 1527481 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 | ||| ||||||||||| | | || || ||||| ||||| ||||| |||||||| | Sbjct 1527480 AACCCTGTTTGTCCAAAAATTGCCGAGATCCATTGGCATCCCATATCTTGACCCCCTTTT 1527421 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 | || ||||| | | ||||||| || Sbjct 1527420 CAGACAGCTCCTGAGCACTTGTGGAACC 1527393 >seq1046 Length=797142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 || || || ||||| |||||||| | ||| || ||| || || ||||| || || || Sbjct 246900 AGTTCTCTACTGAGCACTACGTTAACTCTGCCTTTCAAGGGCCTGTTCTTCTCCGGTATT 246841 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| |||||||||||||| ||||| || ||||| |||||| Sbjct 246840 GAGAACCACGTCTTTCTACCCATGATCACTACATTCTGTTTACCT 246796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406050243348634