Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq272 129 4e-25 >seq272 Length=1747054 Score = 129 bits (142), Expect = 4e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| |||| |||||| |||||||| || || | |||||| || || || || ||||| Sbjct 1531381 AGCCCTGTGATGTGAGCAATCATGTAAGTAAGTAAAGAGTAACTAGCAATATTGAAGGGG 1531322 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || | ||||||||| |||||||||||||||||||| || || || || |||| | Sbjct 1531321 ACACCCAACCCCATGTCTCCCGACCTCTGGTAGAGCTGGCAAGACAGTTCACCATTTGAT 1531262 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || ||||| || | || || || ||||| |||||||| Sbjct 1531261 ACATAGAACTGGCAGAGTGCATGACATGGAGGGAGAGCCAT 1531221 Score = 98.7 bits (108), Expect = 7e-16 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| | || || ||||| || || ||||||||||| || || ||||| |||| ||| Sbjct 1527560 CATGTCTTTATATTCAGCTCCAAAGTGTCTCCATTGGAAACCATAAACCGGACCCAAGTC 1527501 Query 27549 TCCCTCTTCCCTG--TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 27606 ||| || || ||| || | || ||| ||||||||||| | | || || ||||| Sbjct 1527500 TCCTTCCTCTCTGGATGTT--AAACCCTGTTTGTCCAAAAATTGCCGAGATCCATTGGCA 1527443 Query 27607 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||| ||||| |||||||| || || ||||| | | ||||||| || Sbjct 1527442 TCCCATATCTTGACCCCCTTTTCAGACAGCTCCTGAGCACTTGTGGAACC 1527393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369404437622789