Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq470 98.7 1e-15 seq889 84.2 3e-11 >seq470 Length=1305644 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| ||||| | |||||||||||| || | || ||||| ||||| ||||| || Sbjct 601064 TCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCTTC 601005 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || || || ||||| || || || |||||||| || |||||||| Sbjct 601004 AGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATGC 600946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| |||||||||||||| || || || ||||| ||||| ||||| | ||| |||||| Sbjct 590504 TACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATG 590445 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| ||||| ||||||| Sbjct 590444 GTACTGGATTGGAAAAATGACAAATC 590419 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCC 47893 || ||| ||||||||| | || || || || ||||| ||||| || || || || ||||| Sbjct 605244 AGCCATCACTCCCATTCTCTGGTACTCCCCTACACGCTTCTCAAAGAAGTTGGTCTTGCC 605185 Query 47894 TTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGC 47935 ||||| || ||||| ||||| || ||||||||||| |||| Sbjct 605184 TTCCAGGGAAATATTCTCCATGAAGTCAAATGGATTCTCTGC 605143 >seq889 Length=882587 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| ||||| | || || || |||||||| ||||| || || || || | ||| Sbjct 331621 TGGAATTCCCCAGAGAGAACCCTGCGTGTGTAAATGTTACTTGTGTAAGGCTCAATGGAT 331680 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTG 77232 |||||||||||||| || ||||| || || || || ||||| |||| Sbjct 331681 TCATTGTTTCCCAAGATCTGAGCTGTGGAGGCTGTGGGCATTGGTG 331726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694470654408160