Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq470 111 2e-19 seq889 86.0 9e-12 >seq470 Length=1305644 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||| ||||| | |||||||||||| || | ||||||||| ||||| || || || Sbjct 601064 TCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCTTC 601005 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||||| || || || ||||| || || || ||||||||||| || ||||| Sbjct 601004 AGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATGCC 600945 Query 46774 ACAA 46777 |||| Sbjct 600944 ACAA 600941 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||||||||||||||| || || ||||| ||||| ||||| | ||| |||||| | Sbjct 590504 TACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATG 590445 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| |||||||| ||||||| Sbjct 590444 GTACTGGATTGGAAAAATGACAAATC 590419 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46894 TTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 |||| || ||||| || | |||||| |||||||||||||||||||| || || || || Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || ||||| | |||||| || || || || ||| | |||||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTC 593428 >seq889 Length=882587 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 ||||||||| || |||||||||||||| || || || || || ||||||||||| |||| Sbjct 337245 CTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 337304 Query 76390 ACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || | |||||| |||| | | || || ||||| || |||| || ||||| || Sbjct 337305 GCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACTCGATGAT 337361 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| ||||| | || || || |||||||| ||||| || || || || | ||| Sbjct 331621 TGGAATTCCCCAGAGAGAACCCTGCGTGTGTAAATGTTACTTGTGTAAGGCTCAATGGAT 331680 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTG 75827 |||||||||||||| || ||||| || || || || ||||| |||| Sbjct 331681 TCATTGTTTCCCAAGATCTGAGCTGTGGAGGCTGTGGGCATTGGTG 331726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712731044374080