Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1120 132 1e-25 seq14380 118 2e-21 seq4403 98.7 2e-15 seq263 98.7 2e-15 seq33 98.7 2e-15 seq4120 89.7 1e-12 seq618 89.7 1e-12 seq616 89.7 1e-12 seq665 86.0 1e-11 >seq1120 Length=750286 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || | ||| | || ||||| || ||||||||||||| Sbjct 84344 ACCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGA 84403 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || || |||||||||| ||| ||||||||| || Sbjct 84404 CAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 84463 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| || || ||||| || || || | || || || || | || || Sbjct 84464 GATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCAC 84523 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| || ||||| |||| ||| || || || |||||||| || Sbjct 84524 CTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTT 84574 >seq14380 Length=3375 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 ||||||||||||| || ||||| ||||| || || || || || |||||||||| ||| Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 ||||||||| || || || ||||| || || ||||| || || || | || || || Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 || | || || || |||||||| || ||||| |||| ||| || || || |||||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 283098 ATTTT 283102 || || Sbjct 181 ATCTT 185 >seq4403 Length=90654 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12976 TTAGTATAGTGGCGAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 13034 >seq263 Length=1776510 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1655519 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 1655577 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 335734 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 335792 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 336089 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 336031 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 337462 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 337404 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| || Sbjct 342197 TTAGTATAGTGGTAAGTATCCTTGCCTGTCACGTGGGAGACCGGGGTTCAATTCCCTGA 342139 >seq33 Length=3581497 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722838 TTAATATAGTGGTGAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 722780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 841103 TTAGTATAGTGGAGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 841161 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 |||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||| Sbjct 839778 TTAGTATAGTGGAGAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCAATTCCCCGAT 839837 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| || Sbjct 724438 TTAGTATAGTGGTGAGTATCCCTCCCTGTCATGCAGGAGACCAGGGTTCAATTCCCTGA 724380 >seq4120 Length=109457 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 50505 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 50563 >seq618 Length=1115849 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| ||||| | | || ||| ||||||||||| || | ||| | ||||||||| Sbjct 430140 GTGAAGATGTATCGAGGGCTGGCAGCATCCTTGCCACCATGTAACCTGGTACCAAACTGG 430199 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || |||| | ||| |||| |||||||||||||| ||| | | |||||||| || | | Sbjct 430200 CCAATGGGCTGCAGCAAGTTGATGTTGTTGCTACCCACGAAGTTCTGAGCCAAGTTGATG 430259 Query 273900 ATAGTCCCCTGAAGGGA 273916 || |||||| ||||| Sbjct 430260 ATTGTCCCCATCAGGGA 430276 >seq616 Length=1115101 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 68443 TTAGTATAGTGGAGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 68501 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 59917 TTAGTATAGTGAAGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 59975 >seq665 Length=1067793 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 758418 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 758362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046433166495626