Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1120 149 2e-30 seq14380 123 6e-23 >seq1120 Length=750286 Score = 149 bits (164), Expect = 2e-30 Identities = 156/203 (77%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||||||||| || || ||||| |||||||| |||||||| || ||| Sbjct 84568 CAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACCCTTGAGGTGGA--GCCCAGTG 84511 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || || || || || ||||||||||| || |||||||||||||| ||||| | Sbjct 84510 ATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGACCAAC 84451 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| ||||||||| | ||||| | || || ||| Sbjct 84450 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACA 84391 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 | || ||||| ||||| |||||| Sbjct 84390 TTCAGAAAGAGTCAACCCTGCAT 84368 >seq14380 Length=3375 Score = 123 bits (136), Expect = 6e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||||||||| || || ||||| ||||| || |||||||| || ||| Sbjct 179 CAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACTCTTGAGGTGGA--GCCCAGTG 122 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || || || || || ||||||||||| || |||||||||||||| ||||| | Sbjct 121 ATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGACCAAC 62 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | || || ||||| || || || ||||| ||||||||| | ||||| | || || ||| Sbjct 61 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203379266989886