Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1120 122 8e-23 seq14380 95.1 1e-14 seq33 95.1 1e-14 >seq1120 Length=750286 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| | |||||| || ||| ||||||||||| ||||| || Sbjct 84345 CCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 84404 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || ||||| ||||||||||| | || Sbjct 84405 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGG 84464 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| | || || | ||| | | || || || | |||||| Sbjct 84465 ATTCCTTCCTTATCC-TGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCAC 84523 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || |||||||| ||||| || || || || |||||||| || Sbjct 84524 CTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTT 84574 >seq14380 Length=3375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 ||||| ||||| || || ||||| | || || ||||||||||| || || ||||| ||| Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGT 41799 |||||||| | || | | ||||| ||| ||| | || || | ||| | | || Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCC-TGAATCTTGGCCTTAACATTTTCAATTGT 119 Query 41800 GTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 || || | ||||||||| | || || |||||||| ||||| || || || || ||||| Sbjct 120 ATCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTG 179 Query 41860 CATGTT 41865 ||| || Sbjct 180 CATCTT 185 >seq33 Length=3581497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| |||||||| ||||| || ||||| || ||||| ||||| || Sbjct 768897 GCCACCACGGAGACGCAACACCAGGTGCAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 768956 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| || || ||||| | ||| || || | ||| Sbjct 768957 CAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCTGGGGG 769016 Query 41755 AA 41756 || Sbjct 769017 AA 769018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462172133562800