Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 seq15738 118 1e-21 seq11278 118 1e-21 seq4087 118 1e-21 >seq3 Length=7362338 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || ||||| | |||||| | || || || Sbjct 6885408 CCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGCACCGCGAGCCCCTGGGCGCCGTAGC 6885467 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||||||||| ||| ||| | |||| | | || | |||||||||||||| | Sbjct 6885468 GGCCCTGCAGCTCGTTCAGCTGGGTGAAGTCCCTGGCGGTCGTGCCTCAGAGGGACGCCA 6885527 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 ||||||||||||||| ||| ||| || Sbjct 6885528 CGTTCTCGATGAGCACCACCTTGCCGCG 6885555 >seq15738 Length=2708 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || ||||| | |||||| | || || || Sbjct 213 CCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGCACCGCGAGCCCCTGGGCGCCGTAGC 154 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||||||||| ||| ||| | |||| | || | |||||||||||||| | Sbjct 153 GGCCCTGCAGCTCGTTCAGCTGGGTGAAGTCCCTGGTGGTCGTGCCTCAGAGGGACGCCA 94 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 ||||||||||||||| ||| ||| || Sbjct 93 CGTTCTCGATGAGCACCACCTTGCCGCG 66 >seq11278 Length=3306 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || ||||| | |||||| | || || || Sbjct 2634 CCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGCACCGCGAGCCCCTGGGCGCCGTAGC 2693 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||||||||| ||| ||| | |||| | || | |||||||||||||| | Sbjct 2694 GGCCCTGCAGCTCGTTCAGCTGGGTGAAGTCCCTGGTGGTCGTGCCTCAGAGGGACGCCA 2753 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 ||||||||||||||| ||| ||| || Sbjct 2754 CGTTCTCGATGAGCACCACCTTGCCGCG 2781 >seq4087 Length=7163 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || ||||| | |||||| | || || || Sbjct 6839 CCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGCACCGCGAGCCCCTGGGCGCCGTAGC 6898 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||||||||| ||| ||| | |||| | || | |||||||||||||| | Sbjct 6899 GGCCCTGCAGCTCGTTCAGCTGGGTGAAGTCCCTGGTGGTCGTGCCTCAGAGGGACGCCA 6958 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 ||||||||||||||| ||| ||| || Sbjct 6959 CGTTCTCGATGAGCACCACCTTGCCGCG 6986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608141392195000