Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1985 145 8e-30 seq8098 141 1e-28 seq81637 140 3e-28 seq20 122 9e-23 seq175 105 7e-18 seq3 93.3 4e-14 seq65151 89.7 5e-13 >seq1985 Length=32442 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| |||||||| | || || || ||| Sbjct 32195 AAAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCC 32254 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | || || | |||||| ||| || | ||||| |||||||| ||| | || Sbjct 32255 TCTGACACGATTGAGAATG-TCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 32313 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| ||| ||||| || ||||| || | ||||| ||| ||||| Sbjct 32314 CCAACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTA 32373 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || ||||| || || | || |||| || ||| Sbjct 32374 CAACATCCAGAAGGAGTCTACTCTGCACCTGGTCCTTCGGCTGAGAGGAGGC 32425 >seq8098 Length=4112 Score = 141 bits (156), Expect = 1e-28 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| |||||||| | || || || || | Sbjct 188 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCATCT 247 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||||| || || | ||||| ||||| |||||| | ||||| Sbjct 248 GACACGATTGAGAATG-TCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCA 306 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 307 GCAGCGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACGCTCGCAGACTACAA 366 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||| |||||| | || || ||||| || |||| ||||||| |||| Sbjct 367 CATCCAAAAGGAGTCTACTCTACATCTGGTTCTGCGGCTGAGGGGTGGCG 416 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| ||| |||| |||||||||||||| ||| | |||||||| | || |||| || Sbjct 36 TCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTGATCTTCG 95 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| || ||||| || | ||||| ||| ||||||||||||||||||||| | | Sbjct 96 CCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTACAACATCCAGAAGGAGTCTA 155 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || || || | || |||| || ||| Sbjct 156 CCCTCCACCTGGTCCTTCGGCTGAGAGGAGGC 187 >seq81637 Length=1039 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| | || || || || | Sbjct 600 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 541 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | |||||| | ||||| ||||| |||||| | ||||| Sbjct 540 GACACCATCGAGAACG-TGAAAGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCA 482 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 481 GCAGCGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCGCGGACTACAA 422 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||| | || |||||||| || | || ||||||| ||| Sbjct 421 CATCCAAAAGGAGTCTACTCTGCATCTGGTCCTTCGGCTGAGGGGAGGC 373 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| |||||||| | || || || || | Sbjct 372 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 313 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 312 GACACGATTGAGAATG-TCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCA 254 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||| |||||||| || | || |||||| |||||||| Sbjct 253 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGACTACAA 194 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || |||||||| || Sbjct 193 CATCCAGAAGGAGTCTACTCTGCATCTCGT 164 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || || || ||| | Sbjct 828 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCT 769 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||||||||| || ||| | ||||| Sbjct 768 GACACCATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAA 709 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | || || || ||||||||| Sbjct 708 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGTACGCTGGCAGACTACAAC 649 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || || || || Sbjct 648 ATCCAAAAGGAGTCTACCCTCCACCTGGT 620 Score = 105 bits (116), Expect = 7e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 40707 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGC 40765 ||| || |||||||| |||||||| | || || || || | |||| | || |||| Sbjct 1039 AACTCTGACGGGCAAGACCATCACGCTGGAGGTGGAGGCATCTGACACGATTGAGAACG- 981 Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 | || | || |||| ||||| ||||| |||||| | |||||||| || || || | || Sbjct 980 TGAAAGCCAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAGCAGCGGCTGATTTTCG 921 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| || |||| || | ||||| || ||||||||||||||||||||| | | Sbjct 920 CCGGCAAGCAATTGGAAGATGGTCGCACGCTGGCAGACTACAACATCCAGAAGGAGTCTA 861 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || || || | || |||| || ||| Sbjct 860 CCCTCCACCTGGTTCTTCGGCTGAGAGGAGGC 829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || || || || | Sbjct 144 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACTCTGGAGGTTGAGGCATCT 85 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | || | ||| || | ||||||||||| |||||| | ||||| Sbjct 84 GACACGATTGAGAACG-TGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCCCCAGACCA 26 Query 40809 GCAACGACTCATCTACGCGGGCAA 40832 ||| || ||||||| ||| ||||| Sbjct 25 GCAGCGGCTCATCTTCGCCGGCAA 2 >seq20 Length=4946952 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || | | Sbjct 2722412 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 2722353 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||| || | ||||| Sbjct 2722352 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCA 2722294 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 2722293 GCAGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTACAA 2722234 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || || |||| Sbjct 2722233 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCG 2722198 >seq175 Length=1232269 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || || ||| | ||||||| || || ||||||||| ||||||||||||| || ||| Sbjct 439694 GGTGAACGCGTTCTGGCCTTTGCTGCTGTCGAGGGCATCTTCTTTTCGGGGTCGTTTGCC 439753 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| || || |||||||||||||| || ||| ||| |||||| Sbjct 439754 TCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGCCTCACATTCTCCAATGAGCTC 439813 Query 117152 ATCTCCAGGGACGAGG 117167 || | | ||||||| Sbjct 439814 ATTAGCCGTGACGAGG 439829 Score = 102 bits (112), Expect = 8e-17 Identities = 100/124 (81%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGA-CACGAGCGACTGGGAGCGCTTGAACGACA-ACGAGCGCCA 116742 |||||||||||||||| || || ||| ||||||||| |||| | || | |||| || Sbjct 438446 AGGTGGACCTGTCCAAAGATCAGCAGC-ACTGGGAGCAGCTGAA-GCCAGAGGAGCAACA 438503 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| ||||| || || ||||| || |||||||||||||||||||| |||||||| Sbjct 438504 CTTCATCTCCCACGTCCTCGCGTTTTTTGCTGCCAGCGACGGCATCGTCAATGAGAATCT 438563 Query 116803 GGTC 116806 |||| Sbjct 438564 GGTC 438567 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||| | | ||||| || |||||||| ||||| || Sbjct 438703 GGTGGAGCGCTTCAGCCAGGAAGTGCAGATCACAGAGGCACGATGCTTCTATGGCTTCCA 438762 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 ||||| ||||||||| | |||||||| ||||| | || ||||||||||||||| Sbjct 438763 AATCGCAATGGAGAACATCCACTCGGAGATGTA--CAGCCTTCTCATCGACACGTAC 438817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || |||||||||||||| ||||||||||||| |||||| || |||||||| |||||| Sbjct 439195 TTCAACGCCATCGAGACTCTGCCGTGCGTCAAGAGGAAGGCAGACTGGGCGCTCCGCTGG 439254 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGG 117033 ||| ||| ||| | ||| ||||||| Sbjct 439255 ATCTCCGACAGTAACGCCACCTTCGG 439280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC-GACCGAGC 117223 |||||||||| ||||||||||| || | ||||| || ||||||| | ||||| Sbjct 440909 AGGGTCTGCACTGCGACTTTGCGTGCCTCATGTTCCGCCACCTGGTGCACAAGCCCGAG- 440967 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | |||| || | ||||||| | ||||| || ||| |||||| || || || Sbjct 440968 GAGTCGCGTGTACAGCAGATCGTGATGGACGCCGTGATCATTGAGCAGGAGTTTCTGACT 441027 Query 117284 GAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 || |||||||| || || | || | || || || ||| ||| ||||||||| Sbjct 441028 GACGCGCTGCCCGTCAACCTTATCGGCATGAACTGTGACCTCATGAAGCAGTACATCGAG 441087 Query 117344 TTCGTCGCCGACAGGCTGCT 117363 || || |||||||||||||| Sbjct 441088 TTTGTGGCCGACAGGCTGCT 441107 >seq3 Length=7362338 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 73583 CAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAGTGCCCTACTGGGTGTT 73642 ||||||||||||||||||||| ||||||||| || ||| | ||||| |||| | | Sbjct 4477243 CAACCACGCCGTGCTGCTGGTTGGCTACGGCACGGACGCCGGCGAGCCCTTCTGGATCGT 4477184 Query 73643 CAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGTCCG 73693 |||||||| |||||||| | |||||| ||| ||| |||||| | |||| Sbjct 4477183 CAAGAACAGCTGGGGCGAGGGCTGGGGAGAGGGCGGATATTTCAGGATCCG 4477133 >seq65151 Length=1204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGC-CACCGACAGCGTGCAAACGCTCAAGGAAAA 40775 ||||| ||||||| | | || || | ||| || |||| | | | | || |||| ||| Sbjct 533 GGCAAGACCATCAGCCTTGAAGT-GCAGCTCATGGACACCACGGAGAACCTGAAGGCAAA 591 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| ||||| || || ||||||||||| | || |||||||| ||| | | Sbjct 592 GATCCAGGACAAGGAGGGGATTCCTCCGGACCAGCAAAGGCTGATCTACGCCAGCAGAGA 651 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||| || | |||||| || | |||||||||| | | || | |||| ||||| || Sbjct 652 GCTGGAGGATGGTCGCACCGTCTCCCACTACAACATTCTGCCGGGGTCCACTCTGCACCT 711 Query 40896 AGT 40898 || Sbjct 712 GGT 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514664534330000