Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq81637 116 3e-21 seq1985 93.3 4e-14 seq8098 91.5 1e-13 >seq81637 Length=1039 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||| |||||||| || | ||||| ||| || ||||| || ||| Sbjct 404 GTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCTTCAAGCTGCTTGCCA 463 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || |||||||| || || || || ||||||||||| |||||| ||| Sbjct 464 GCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATTTTTGCTTTC 523 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| |||||| | ||| ||| ||||| | || | || ||||| |||||||| Sbjct 524 ACGTTCTCGATGGTGTCAGATGC-CTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGAGT 582 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 583 CTTCACGAAGATCTGCAT 600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| || || ||||| ||| || Sbjct 848 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGACCATCTTCC 907 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || || ||| | || || |||||||| || || || || ||||||||||| | Sbjct 908 AATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGA 967 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | || | ||||| | ||| ||| ||||| | || | || || Sbjct 968 ATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGC-CTCCACCTCCAGCGTGATGGTCTT 1026 Query 118709 GCCGGTCAGAGTT 118721 ||| ||||||||| Sbjct 1027 GCCCGTCAGAGTT 1039 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || | || || ||| || ||||| || || Sbjct 176 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGACCATCTTCCAGCTGCTTGCCG 235 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || || || || ||||||||||| ||| || || Sbjct 236 GCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTG 295 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | ||| ||| ||||| | || | || ||||| ||||| || Sbjct 296 ACATTCTCAATCGTGTCAGATGC-CTCAACCTCCAGCGTGATGGTCTTGCCCGTCAGCGT 354 Query 118721 TTTTACAAAAATCTGCATGGCT 118742 || ||||| ||||||||| || Sbjct 355 CTTGACAAAGATCTGCATGCCT 376 >seq1985 Length=32442 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| || | ||||| ||| || Sbjct 32406 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCC 32347 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| || ||||| || || || || |||||||||||||| Sbjct 32346 AGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 32287 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | ||||| | | ||| ||||| | || | || ||| Sbjct 32286 ATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTG 32227 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || |||||||| Sbjct 32226 CCCGTCAGAGTCTTCACGAAGATCTGCAT 32198 >seq8098 Length=4112 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||| |||||||| || | ||||| ||| || ||||| || || Sbjct 384 GTAGACTCCTTTTGGATGTTGTAGTCTGCGAGCGTGCGACCATCTTCCAGCTGCTTGCCG 325 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || || ||||||||||| || || || Sbjct 324 GCGAAGATCAACCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTG 265 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | ||| ||| ||||| | || | || ||||| ||||| || Sbjct 264 ACATTCTCAATCGTGTCAGATGC-CTCCACCTCCAGAGTGATGGTCTTGCCCGTCAGCGT 206 Query 118721 TTTTACAAAAATCTGCATGGCT 118742 || ||||| ||||||||| || Sbjct 205 CTTGACAAAGATCTGCATGCCT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433375030598500