Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq18 120 2e-22 seq526 116 3e-21 seq42333 113 3e-20 >seq18 Length=5167641 Score = 120 bits (132), Expect = 2e-22 Identities = 601/937 (64%), Gaps = 19/937 (2%) Strand=Plus/Plus Query 107646 GACTGTGAGCGC-TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGA 107704 ||||| || ||| |||||| | | |||| || | | | | || ||||| | || || Sbjct 4340042 GACTGCGA-CGCGTTCAAGCGCGACAGGAGGTACGTGACGGTGCCGCTGAGCGAGGAGGA 4340100 Query 107705 GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACG 107764 | | ||||||||| |||||||| |||||| ||| | | || | | || | Sbjct 4340101 GGCGGCCTTCCCCATCGCCTACTCCGTGGTGGCCCACCACCGCGTGGACATGCTGGAGAG 4340160 Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824 ||||||||| ||| | || || || || ||| | ||||| | |||||||| |||||| Sbjct 4340161 GCTGCTGCGCGCCATCTACGCGCCACAAAACGTCTACTGCATTCACGTGGACCAGAAGTC 4340220 Query 107825 CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCAT 107884 || | | | | | |||||||| || | | ||||||||||| |||||| | Sbjct 4340221 GCCGCCGCCCTACCAGGAGGCGGTGCGCGCTCTCGCCGCGTGCTTCCCCAACGTCTTCCT 4340280 Query 107885 GGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAA 107944 |||||| | || | |||||| || |||||||| | ||||| || ||||| || Sbjct 4340281 GGCCAGCCGGCAGGAGCGGGTGGTCTACACCTCCTGGCTGCGCGTGCAGGCCGACCTCAA 4340340 Query 107945 CTGTATGGAAGA-CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCG 108003 ||| ||| || || | | | || | ||| |||||||| || | || |||| Sbjct 4340341 CTGCATGCGGGACCTCGTGGCGGCGC-CGCAGCCCTGGAAGTATTTCATCAACCTGTGCG 4340399 Query 108004 GGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGG 108063 | ||||||||||| || ||||| |||||||| | || || | || | Sbjct 4340400 GCCTCGACTTCCCCATTAAAACCAACCTGGAGATGGTGCGAGCGCTGCGCGCCCTCAACG 4340459 Query 108064 GTAAGAACAGTATGGAGTCTGAGGTAC-CTTCTGAGTCCaaaaaaaaTCGCTGG-AAATA 108121 | ||||||| |||||||| | | || || | | ||| || ||| | ||| Sbjct 4340460 GCGAGAACAGCATGGAGTC-CATGCACACTCCCGGCGGCAAGGTGGGCCGGTGGCAGATA 4340518 Query 108122 CCGCTATGAG---GTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCC 108178 ||| | ||| |||| ||| ||| | | || || ||| |||| |||||| || Sbjct 4340519 -CGCCACGAGATTGTGAACGACGGCCTGCGCTCCACGGGCGAGAAGAAGTCCCCTCCGCC 4340577 Query 108179 TGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCA 108238 ||||||||| | ||||| || || | |||| | || ||||| || | Sbjct 4340578 CATCCCCACGCCCATGTTCTCCGGGAACGCGTACATCGTGGTGACGCGCGCCTTCGTGGA 4340637 Query 108239 ACATGT-CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 || || || || | |||| | || || | || |||| || ||||| | | Sbjct 4340638 GCACGTGCTGAG-CGACCCCACGGTGCAGGTGCTCATCGAGTGGGAGAAGGACACGTTCA 4340696 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGT 108355 |||||||||| ||||| ||||| || || ||||| ||| ||| || |||| ||||| Sbjct 4340697 GCCCCGACGAGCACCTGTGGGCGACGCTGCAGCGCCTGC-CCG-GGGTGCCCGGCTCCTC 4340754 Query 108356 TCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTG 108415 || ||| |||||| || | ||||||| |||||||| | ||||| ||| Sbjct 4340755 GCCGCCGCACGACAAGTACGACGTGGAGGACATGATGGCCATCGCGCGCCTCGTGCGGTG 4340814 Query 108416 GCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474 | ||| ||||| || | ||| |||| |||| || | |||||| || | || Sbjct 4340815 GTCCTACATGGAGGGCGACACGCTGCAAGGGGCCGCC-TACCCGCCCTGCCGCGGCACCC 4340873 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | | | ||||||||||| || | ||| ||||||| ||| | ||| || | | | Sbjct 4340874 ACATGCGAGCCATCTGCATCAACAGCGCCAAGGACCTGGCGTGGGTGCTCAAGCAGCGGC 4340933 Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 |||| || | |||||| | ||| || ||||| || Sbjct 4340934 ACCTGTTCGTCAACAAGCTGGACTCGGACGTGGACGA 4340970 Score = 114 bits (126), Expect = 9e-21 Identities = 304/459 (66%), Gaps = 4/459 (1%) Strand=Plus/Plus Query 107626 ATTACCTCAACATAACCAGAGACTGTGA-GCGCTTCAAGGCCCAAAGGAAGTTCATACAG 107684 ||||||| | || || | ||||| || ||| |||||| | | |||| || | | | Sbjct 4325175 ATTACCTGAGGATGACGCGCGACTGCGATGCG-TTCAAGCGCGACAGGAGGTACGTGACG 4325233 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 | || ||||| | || ||| | ||||||||| |||||||| |||||| ||| | Sbjct 4325234 GTGCCGCTGAGCGACGAGGAGGCGGCCTTCCCCATCGCCTACTCCGTGGTGGCCCACCAC 4325293 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 | || | | || |||||||||| ||| | || || || |||||| | ||||| Sbjct 4325294 CGCGTGGACATGCTGGAGAGGCTGCTGCGCGCCATCTACGCGCCACAGAACGTCTACTGC 4325353 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 |||||||||| |||||| || | | | | | |||||||| || | | Sbjct 4325354 CTCCACGTGGACCAGAAGTCGCCGCCGCCCTACCAGGAGGCGGTGCGCGCTCTCGCCGCG 4325413 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 ||||||||||| |||||| ||||||| | || | |||||| || ||||||| Sbjct 4325414 TGCTTCCCCAACGTCTTCCTGGCCAGCCGGCAGGAGCGGGTGGTCTACAGCTCCTGGCTG 4325473 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGA-CTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | ||||| || ||||| ||||| ||| || || | | | || | ||| ||||| Sbjct 4325474 CGCGTGCAGGCCGACCTCAACTGCATGCGGGACCTCGTGGCGGCGC-CGCAGCCCTGGAA 4325532 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| || | || ||||| ||||||||||| || ||||| |||||||| | Sbjct 4325533 GTATTTCATCAACCTGTGCGGCCTCGACTTCCCCATTAAAACCAACCTGGAGATGGTGCG 4325592 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 || || | | || || |||||||| |||||||| Sbjct 4325593 AGCGCTGCGCACCCTCAACGGGAAGAACAGCATGGAGTC 4325631 >seq526 Length=303571 Score = 116 bits (128), Expect = 3e-21 Identities = 240/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 || ||| || ||||||||| |||||| | || || ||||| | | || | | Sbjct 220610 GAGGAGGCAGCCTTCCCCATCGCCTACGCCATCGTTGTCCACCACCGCGTGGACATGCTG 220669 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || |||||||||| ||| | ||||| || |||||| | ||||| |||||||||| | Sbjct 220670 GAGAGGCTGCTGCGTGCCATCTATGCGCCGCAGAACCTCTACTGCCTCCACGTGGACGCC 220729 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 |||||||| | | | ||||||| ||| | ||||||||||||| || Sbjct 220730 AAGTCCCCCCGCGCCTACCTGGAGGCGGCGCGCGCCCTCGCCGCCTGCTTCCCCAACGTG 220789 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 ||| ||||| | | ||| ||||||| |||||||| ||||| | ||||| || ||| Sbjct 220790 TTCGTGGCCCGCCGGCTGGAGACGGTGGTCTATGCCTCGTGGTCGCGCGTGCAGGCCGAC 220849 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTC-----AGT-GCCATGGAAGTACTTACTG 107993 || ||||| ||| || || | || | | ||| || |||| |||||| | Sbjct 220850 CTCAACTGCATGCGCGAGCTGGTGGAGCGGGCCGACGAGTACCCCTGGAGGTACTTCATC 220909 Query 107994 AATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||| ||||| ||||||||||| |||||||| ||||| || | ||| || Sbjct 220910 AATCTCTGCGGCCTCGACTTCCCCATCAAGACCAACCTGGAGATCGTGCGGGCACT 220965 Score = 104 bits (114), Expect = 2e-17 Identities = 200/293 (68%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 107764 GGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGT 107823 |||||||||| ||| | || || || |||||| | ||||| |||||||||| | |||| Sbjct 168817 GGCTGCTGCGTGCCATCTACGCGCCGCAGAACTTCTACTGCCTCCACGTGGACGCCAAGT 168876 Query 107824 CCCCA-GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTC 107882 |||| | | || | |||||||| ||| || ||||||||||||| || ||| Sbjct 168877 CCCCCCGCGTCTACCTG-GAGGCGGTGCGCGCCCTTGCCGCCTGCTTCCCCAACGTGTTC 168935 Query 107883 ATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTG 107942 ||||| | | ||| ||||||| || ||||| ||||| | ||||| || ||||| Sbjct 168936 GTGGCCCGCCGGCTGGAGACGGTGGTCTACGCCTCGTGGTCGCGCGTGCAGGCCGACCTC 168995 Query 107943 AACTGTATGGAAGACTTGCTCCAGAGCTCAG------TGCCATGGAAGTACTTACTGAAT 107996 ||||| ||| || || | || || | | || |||| |||||| | || Sbjct 168996 AACTGCATGCGCGAGCTGGTGGAGCGCGCCGGCGAGCACCCCTGGAGGTACTTCATCAAC 169055 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||| ||||||||||| |||||||| ||||| || | ||| || Sbjct 169056 CTCTGCGGCCTCGACTTCCCCATCAAGACCAACCTGGAGATCGTGCGGGCGCT 169108 Score = 104 bits (114), Expect = 2e-17 Identities = 232/346 (67%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||||| |||||| | || || | ||| | | || | | || ||||||| Sbjct 178849 CTTCCCCATCGCCTACGCCATCGTCGCCCACCACCGCGTGGACATGCTGGAGAGGCTGCT 178908 Query 107771 GCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC-CCCAG 107829 ||| ||| | || ||||| |||||| | ||||| |||||||||| | ||||| ||| | Sbjct 178909 GCGTGCCATCTACGCCCCACAGAACCTCTACTGCCTCCACGTGGACGCCAAGTCTCCCCG 178968 Query 107830 AGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCA 107889 | || | |||||||| ||| | ||||||||||||| || || ||||| Sbjct 178969 CGCCTACCTG-GAGGCGGTGCGCGCCCTCGCCGCCTGCTTCCCCAACGTGTTTGTGGCCC 179027 Query 107890 GTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTA 107949 | | ||| ||||||| || ||||| ||||| | ||||| || ||||| ||||| | Sbjct 179028 GCCGGCTGGAGACGGTGGTCTACGCCTCGTGGTCGCGCGTGCAGGCCGACCTCAACTGCA 179087 Query 107950 TGGAAGACTTGCTCCAGAGCTCAG------TGCCATGGAAGTACTTACTGAATACATGCG 108003 || || || | || || | | || ||||||||||| | || |||| Sbjct 179088 TGCGCGAGCTGGTGGAGCGCGCCGGCGAGCACCCCTGGAAGTACTTCATCAACCTCTGCG 179147 Query 108004 GGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 | ||||||||||| |||||||| ||||| || | ||| || Sbjct 179148 GCCTCGACTTCCCCATCAAGACCAACCTGGAGATCGTGCGGGCGCT 179193 Score = 100 bits (110), Expect = 2e-16 Identities = 229/345 (66%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||||| |||||| | || || ||||| | | || | | || ||||||| Sbjct 183832 CTTCCCCATCGCCTACGCCATCGTTGTCCACCACCGCGTGGACATGCTGGAGAGGCTGCT 183891 Query 107771 GCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA 107830 ||| ||||| || || || |||||| | ||||| |||||||||| | |||||||| Sbjct 183892 GCGTGCCGTCTACGCGCCGCAGAACCTCTACTGCCTCCACGTGGACGCCAAGTCCCCCCG 183951 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 | | | ||||||| ||| | ||||||||||||| || ||| ||||| | Sbjct 183952 CGCCTACCTGGAGGCGGCGCGCGCCCTCGCCGCCTGCTTCCCCAACGTGTTCGTGGCCCG 184011 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 | ||| ||||||| || ||||| ||||| | ||| | || ||||| ||||| || Sbjct 184012 CCGGCTGGAGGCGGTGGTCTACGCCTCGTGGTCGCGCGTGGAGGCCGACCTCAACTGCAT 184071 Query 107951 GGAAGACTTGCTCCAGAGCTCAG------TGCCATGGAAGTACTTACTGAATACATGCGG 108004 | || || | || || | | || |||| |||||| | || ||||| Sbjct 184072 GCGCGAGCTGGTGGAGCGCGCCGGCGAGCACCCCTGGAGGTACTTCATCAACCTCTGCGG 184131 Query 108005 GACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||||||||| |||||||| ||||| || | ||| || Sbjct 184132 CCTCGACTTCCCCATCAAGACCAACCTGGAGATCGTGCGGGCGCT 184176 >seq42333 Length=1560 Score = 113 bits (124), Expect = 3e-20 Identities = 247/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 ||| ||||| | || ||| | ||||||||| |||||||| | || ||||| | Sbjct 1385 CCCTCTGAGCCACGAGGAGGCGGCCTTCCCCATCGCCTACTCCGTCGTTGTCCACCACCG 1326 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 | || | | || |||||||||| ||||| || || || |||||| | ||||| | Sbjct 1325 CGTGGACATGCTGGAGAGGCTGCTGCGTGCCGTCTACGCGCCGCAGAACCTCTACTGCCT 1266 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 ||||||||| | |||||||| | | | ||||||| ||| | |||| Sbjct 1265 CCACGTGGACGCCAAGTCCCCCCGCGCCTACCTGGAGGCGGCGCGCGCCCTCGCCGCCTG 1206 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||||||||| || ||| ||||| | | ||| |||||||||| ||||| ||||| | Sbjct 1205 CTTCCCCAACGTGTTCGTGGCCCGCCGGCTGGAGACGGTGGTTTACGCCTCATGGTCGCG 1146 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTG-----CCATG 107980 || || || ||||| ||||| ||| || || | || || | ||| || || Sbjct 1145 CGTACAGGCCGACCTCAACTGCATGCGCGAGCTGGTGGAGCGCGCCGGTGAGCGCCCCTG 1086 Query 107981 GAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGT 108040 || |||||| | || ||||| ||||||||||| |||||||| ||||| || Sbjct 1085 GAGGTACTTCATCAACCTCTGCGGCCTCGACTTCCCCATCAAGACCAACCTGGAGATCGT 1026 Query 108041 CCTGGCCCT 108049 | ||| || Sbjct 1025 GCGGGCGCT 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347903240198250