Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1985 150 1e-31 seq8098 127 2e-24 seq81637 123 2e-23 seq20 122 7e-23 >seq1985 Length=32442 Score = 150 bits (166), Expect = 1e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| ||||||| | | |||| |||||| || ||||||||| ||||||||||| Sbjct 32425 GCCTCCTCTCAGCCGAAGGACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 32366 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || |||||||| || |||||||| |||| ||||||||||| || || Sbjct 32365 GAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGG 32306 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || ||| ||| || | | | |||| ||||||| Sbjct 32305 AATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATCGTGTCAGAGGCCTCCAC 32246 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAA 45346 ||||| || || ||||||||||||||||||||||| ||||| ||||| ||| || || Sbjct 32245 CTCCAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTTTGTCTGAA 32188 >seq8098 Length=4112 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167 ||||||| |||| | | |||| || || || |||||| || ||||||||||| Sbjct 416 CGCCACCCCTCAGCCGCAGAACCAGATGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTG 357 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || |||| | || ||||| || || |||||||| ||||||||||| ||||| || | Sbjct 356 CGAGCGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGGG 297 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| || || ||| || | | | |||| |||||| Sbjct 296 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCAATCGTGTCAGATGCCTCCA 237 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||| || || |||||||||||||| ||||| |||||||| |||||| Sbjct 236 CCTCCAGAGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 187 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| ||||||| | | |||| ||| || || ||||||||| ||||||||||| Sbjct 187 GCCTCCTCTCAGCCGAAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGC 128 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || |||||||| || |||||||| |||| || ||| ||||| || || Sbjct 127 GAGCGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 68 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | ||||| |||||| ||| ||| ||| || Sbjct 67 AATGCCCTCTTTGTCCTGAATCTTTGCCTTGAC 35 >seq81637 Length=1039 Score = 123 bits (136), Expect = 2e-23 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGG--CGATCGTCGTCCAGTT 45191 ||||| || ||||||||| ||||||||||| | || || ||| | || ||||| | Sbjct 170 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGGGTACGACCATCTTCCAGCT 227 Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251 | || |||||||| ||||||| ||| ||||| || || | |||||||||||| ||| | Sbjct 228 GCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCT 287 Query 45252 TTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | ||| || | | | |||| |||| ||||||| || || |||||||||| Sbjct 288 TGGCCTTGACATTCTCAATCGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTGCCCG 347 Query 45312 TCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||||| |||||||| |||||| Sbjct 348 TCAGCGTCTTGACAAAGATCTGCATG 373 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||| || ||||||||||| ||| ||| | || ||| Sbjct 620 ACCAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCCAGCGTACGACCATCTTCC 679 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||||||||| || || | ||||| |||||| | Sbjct 680 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATCCCCTCTTTGTCCTGA 739 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| |||||||||||| || || |||||| Sbjct 740 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCCTCCACCTCCAGAGTGATGGTCTTG 799 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 800 CCAGTCAGCGTCTTCACGAAGATCTGCATG 829 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| || |||||| || ||||||||||| || |||| | || || Sbjct 392 ACCAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGACCATCTTCA 451 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| |||||| ||||| || || | |||||||||||| Sbjct 452 AGCTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 511 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| || || | | | | |||| |||| ||||||| || || |||||| Sbjct 512 ATTTTTGCTTTCACGTTCTCGATGGTGTCAGATGCCTCAACCTCCAGCGTGATGGTCTTG 571 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||||||||| ||||| ||||| Sbjct 572 CCCGTCAGAGTCTTCACGAAGATCTGCAT 600 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| ||||||| | | |||| ||| || || ||||||||| ||||||||||| Sbjct 829 GCCTCCTCTCAGCCGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCTGC 888 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || |||| ||| || |||||||| |||| |||||| ||||| || || Sbjct 889 CAGCGTGCGACCATCTTCCAATTGCTTGCCGGCGAAAATCAGCCGCTGCTGGTCTGGGGG 948 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| || || || | | | |||| ||||||| Sbjct 949 GATCCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATCGTGTCAGATGCCTCCAC 1008 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGT 45318 ||||| || || ||||||||||||||||| Sbjct 1009 CTCCAGCGTGATGGTCTTGCCCGTCAGAGT 1038 >seq20 Length=4946952 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| || ||||| |||||||||||| ||| ||| | || ||| Sbjct 2722204 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 2722263 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||||||||| | || ||||| ||| Sbjct 2722264 AGCTGCTTGCCTGCGAAGATTAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGG 2722323 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 2722324 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 2722383 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| ||||| |||||| Sbjct 2722384 CCCGTCAGGGTCTTCACGAAGATCTGCATG 2722413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394660509933625