Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lethenteron_20camtschaticum_20[genbank_20GCA_5F000466285.1_202013- 09-13] 86,125 sequences; 1,030,662,718 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq81637 125 6e-24 seq20 111 1e-19 seq8098 100 3e-16 seq1985 98.7 9e-16 >seq81637 Length=1039 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || ||||| | || ||||| | || Sbjct 600 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACGCTGGAGGTTGAGGCATCT 541 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||||||||| || | || || |||||| Sbjct 540 GACACCATCGAGAACGTGAAAGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 481 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| ||| | ||||| | || | || || ||| Sbjct 480 CAGCGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCGCGGACTACAAC 421 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || ||||| |||||||| ||| | |||||||| || Sbjct 420 ATCCAAAAGGAGTCTACTCTGCATCTGGTCCTTCGGCTGAGGGGAGG 374 >seq20 Length=4946952 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 2722416 AATCATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCC 2722357 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| |||| | || || | || ||| ||||||||| | || ||||| Sbjct 2722356 AAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGA 2722297 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| ||||| ||||| ||||| ||| ||||||| || || ||| || Sbjct 2722296 CCAGCAGCGACTAATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACGCTGTCCGACTA 2722237 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || |||||||| || || || ||||| || Sbjct 2722236 CAACATCCAGAAAGAATCCACCCTCCACCTGGTCCT 2722201 >seq8098 Length=4112 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || || || | || Sbjct 187 CATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCATC 246 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || ||||||||| || | || || ||||| Sbjct 247 TGACACGATTGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCA 306 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| ||||||| | || | || || || Sbjct 307 GCAGCGGTTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACGCTCGCAGACTACAA 366 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| || || ||||| |||||||| || | |||||||| || Sbjct 367 CATCCAAAAGGAGTCTACTCTACATCTGGTTCTGCGGCTGAGGGGTGG 414 >seq1985 Length=32442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||||||||| ||||| || ||||| | || || || | Sbjct 32195 AAAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTGGAGGTGGAGGCC 32254 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | ||||| || || || ||||||||| ||| | || || || Sbjct 32255 TCTGACACGATTGAGAATGTCAAGGCAAAG-ATCCAGGACAAGGAGGGCATTCCCCCAGA 32313 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| ||||| || || ||||| ||||| || ||||||| | || | || || Sbjct 32314 CCAACAGCGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACGCTCGCAGACTA 32373 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| || ||||| ||| | ||||| || || Sbjct 32374 CAACATCCAGAAGGAGTCTACTCTGCACCTGGTCCTTCGGCTGAGAGGAGG 32424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445286504610000